PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca30092.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family SBP
Protein Properties Length: 106aa    MW: 11902.1 Da    PI: 8.0715
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca30092.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.41.6e-411995177
                --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
         SBP  1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77
                +Cq+++C+adl++ak+yhrrhkvCe+h+kapvv+v+g +qrfCqqCsrfhe+ efD++krsCr+rLa+hn+rrrk +
  Dca30092.1 19 CCQADNCTADLTDAKRYHRRHKVCEFHAKAPVVIVQGYHQRFCQQCSRFHEVMEFDDTKRSCRNRLAGHNARRRKGS 95
                6*************************************************************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.6E-341381IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.0771794IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.75E-381898IPR004333Transcription factor, SBP-box
PfamPF031101.7E-322093IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009911Biological Processpositive regulation of flower development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0010321Biological Processregulation of vegetative phase change
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MDGDDNDQGG AGSNNTIVCC QADNCTADLT DAKRYHRRHK VCEFHAKAPV VIVQGYHQRF  60
CQQCSRFHEV MEFDDTKRSC RNRLAGHNAR RRKGSFDAQA PGETSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-351093184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00634PBMTransfer from PK22320.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021726481.12e-46squamosa promoter-binding protein 1-like isoform X2
SwissprotQ387418e-40SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBLA0A0K9R2V19e-46A0A0K9R2V1_SPIOL; Uncharacterized protein
STRINGcassava4.1_018710m7e-44(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.14e-40squamosa promoter binding protein-like 3
Publications ? help Back to Top
  1. Klein J,Saedler H,Huijser P
    A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.
    Mol. Gen. Genet., 1996. 250(1): p. 7-16
    [PMID:8569690]