PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Dca27595.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

C3H

Protein Properties

Length: 484aa MW: 52596.9 Da PI: 6.0662

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca27595.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.6	3.4e-06	431	455	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+ff C+yG++C+F H+p Dca27595.1 431 QKPCKFFNSPKGCRYGSSCPFEHVP 455 579******************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	15.347	428	456	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0087	429	455	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	8.4E-5	431	454	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.0E-4	432	453	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.62E-6	433	459	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence Send to blast
MNKVLSKDRL KRVKWASDDS LCQVKLFLSE DCPSQIGNDA EDHLQIKASL QSNGMNVDDL 60 PPGFGGKGPS YTQNQVCIPQ IRWSRPPVFK LDADWHVVAG EESEERGTQN HREMRVLEAL 120 YPRASAIPPS PSISPELKAS RYDDSQTPII PLNSIEDEDP LPTESTPCSN SSSGAVSNVP 180 IESKTTANDK LHAIIPGLDA DVIAAASAAY AASLKNNNEM GNMVDTELLI RILNEPKMIE 240 ALTKGSPPLP LVTSQAFHAP MTSRPITEPC TITSFDRTNE NIKPFLTFPT PYSDASSNTS 300 SSLQAMLSKL GDSLKPGNEN GVHLGSNASS NTMPFLNSAM FGSNASSPNV GPSHMLTSSS 360 QFSAPQPDRF PVPSVRTPAT KDLNYYKSLI RLHGTGGEDA TPEQFLPPQY QVSLPEATTT 420 SVQGQTRPKS QKPCKFFNSP KGCRYGSSCP FEHVPLLDLR PGNYADNDRS NKRLKISSDS 480 YEKC

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence Send to blast

MNKVLSKDRL KRVKWASDDS LCQVKLFLSE DCPSQIGNDA EDHLQIKASL QSNGMNVDDL  60
PPGFGGKGPS YTQNQVCIPQ IRWSRPPVFK LDADWHVVAG EESEERGTQN HREMRVLEAL  120
YPRASAIPPS PSISPELKAS RYDDSQTPII PLNSIEDEDP LPTESTPCSN SSSGAVSNVP  180
IESKTTANDK LHAIIPGLDA DVIAAASAAY AASLKNNNEM GNMVDTELLI RILNEPKMIE  240
ALTKGSPPLP LVTSQAFHAP MTSRPITEPC TITSFDRTNE NIKPFLTFPT PYSDASSNTS  300
SSLQAMLSKL GDSLKPGNEN GVHLGSNASS NTMPFLNSAM FGSNASSPNV GPSHMLTSSS  360
QFSAPQPDRF PVPSVRTPAT KDLNYYKSLI RLHGTGGEDA TPEQFLPPQY QVSLPEATTT  420
SVQGQTRPKS QKPCKFFNSP KGCRYGSSCP FEHVPLLDLR PGNYADNDRS NKRLKISSDS  480
YEKC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-