PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

Dca27035.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

C3H

Protein Properties

Length: 325aa MW: 36725.7 Da PI: 4.5282

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca27035.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.4	3.9e-06	43	66	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k lC ff + G+C G +CkF+H+ Dca27035.1 43 KSILCEFFKA-GQCTKGFKCKFSHD 66 66797777.***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	6.1E-5	41	67	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.394	41	68	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.27E-6	41	66	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.1E-4	43	67	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.498	112	150	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.9	112	149	IPR000571	Zinc finger, CCCH-type
Pfam	PF16543	6.9E-17	169	252	IPR032378	ZC3H15/TMA46 family, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MSISAMLRWQ KKKEEEKARE KELNDLFKIA VTQPKVPIGV DPKSILCEFF KAGQCTKGFK 60 CKFSHDLNVQ RKGEKINIYS DKRDDEGTME DWDQEMLEKA IAEKSKEYQQ NKPTEIVCKH 120 FLDAVEKKQY GWFWVCPNGG KNCHYRHALP PGYILKSQMK ALLEEESEKM AIEDEIEDQR 180 SKVKGSTPMT PELFAQWKKK KLDEKAASVA SQTAERAKND RLSGRELFMS DASLFVDHAE 240 AWDNYERDES QENEAQANEK PGGADGSSSS SHVNPDAPSS SGTANGDDDD IPDDIDDDLD 300 DDELEELEAS LSRTSIQINE PSSSA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010696358.1	1e-163	PREDICTED: zinc finger CCCH domain-containing protein 11
Swissprot	Q0JHZ2	1e-147	C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBL	A0A0J8E1P0	1e-162	A0A0J8E1P0_BETVU; Uncharacterized protein
STRING	XP_010696358.1	1e-163	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20280.1	1e-129	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]