PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca26955.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB
Protein Properties Length: 281aa    MW: 32498.7 Da    PI: 7.558
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca26955.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding574.4e-181562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd ll ++++++G g+W++++ + g++R++k+c++rw +yl
       Dca26955.1 15 KGSWTDEEDNLLRNCIEKHGEGNWHRVPIRAGLNRCRKSCRLRWMNYL 62
                     799*******************************************97 PP
2Myb_DNA-binding48.52e-1568113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg + ++E +l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
       Dca26955.1  68 RGQFNEDEVDLIIRLHKLLGNR-WSLIAGRIP-GRTANDVKNYWNTHL 113
                      899*******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.6681266IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-211265IPR009057Homeodomain-like
SuperFamilySSF466891.8E-2813109IPR009057Homeodomain-like
SMARTSM007178.3E-161464IPR001005SANT/Myb domain
PfamPF002495.4E-171562IPR001005SANT/Myb domain
CDDcd001678.17E-111762No hitNo description
Gene3DG3DSA:1.10.10.604.2E-2366117IPR009057Homeodomain-like
SMARTSM007173.5E-1467115IPR001005SANT/Myb domain
PROSITE profilePS5129419.53367117IPR017930Myb domain
PfamPF002493.1E-1468113IPR001005SANT/Myb domain
CDDcd001671.09E-971113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MYKMGSKANC GSVRKGSWTD EEDNLLRNCI EKHGEGNWHR VPIRAGLNRC RKSCRLRWMN  60
YLKPNIKRGQ FNEDEVDLII RLHKLLGNRW SLIAGRIPGR TANDVKNYWN THLLKKMCPN  120
PKQPNNYNNN VCSKTTRTTS SSITTTTKKE GSNTASGIII KPHAWSFAKQ YGGEGGRSSV  180
VSKSSSSVIE NSEEEEEEEQ QQQQQDDKWW EKLVDIYEEK EKEKGKDDTN NYNNNNNNNI  240
NNNNSSNNND DHDDVQHILH TAYSSWDDHL LWNLDLNVWD S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-20151177108B-MYB
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00213DAPTransfer from AT1G66370Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010062250.15e-66PREDICTED: transcription factor MYB113
STRINGXP_010062250.12e-65(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.12e-58myb domain protein 113