PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca24725.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family GATA
Protein Properties Length: 290aa    MW: 31832.5 Da    PI: 6.3878
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca24725.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.23.5e-16211247135
        GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C++Cg  +  Tp++Rrgp+g++tLCnaCGl+++ kg+
  Dca24725.1 211 CRHCGINEksTPMMRRGPEGPRTLCNACGLMWANKGT 247
                 ****998889************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5101713.245135177IPR010402CCT domain
PfamPF062033.3E-16135177IPR010402CCT domain
SMARTSM004011.2E-11205258IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.37E-12208264No hitNo description
Gene3DG3DSA:3.30.50.101.6E-14209252IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440211238IPR000679Zinc finger, GATA-type
PfamPF003204.6E-14211247IPR000679Zinc finger, GATA-type
CDDcd002022.42E-14211260No hitNo description
PROSITE profilePS501148.59220253IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MDDLHGREGQ MHLAEVEEHM HVHYMHDQNH GMHHMSNGDE LDDEHDDGGV VGGGLDNELQ  60
NDHVNVGDNN GGMLIPGGDN DQLTLSFQGQ VQAVLLLLGG RELPTNVPAV PLTSSHPNRS  120
QGVAATPPRF NVPQRLASLL RFREKRKERN FDKKIRYTVR KEVALRMQRN KGQFTSSKPG  180
HDDSSSAITS WECNQNWGPD GSLAPLQEVC CRHCGINEKS TPMMRRGPEG PRTLCNACGL  240
MWANKGTLRD LSKAPMPSGQ IVALSKNDEQ NGNLEANQLV GIVGNVSDSS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00369DAPTransfer from AT3G21175Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010696086.11e-154PREDICTED: GATA transcription factor 28
SwissprotQ8GXL71e-107GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A0J8BB741e-152A0A0J8BB74_BETVU; Uncharacterized protein
STRINGXP_010696086.11e-153(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.12e-83ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]