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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Dca23163.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family |
HSF |
Protein Properties |
Length: 390aa MW: 44989.9 Da PI: 5.9989 |
Description |
HSF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Dca23163.1 | genome | DCA | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HSF_DNA-bind | 113.7 | 1.2e-35 | 15 | 106 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98
Fl+k+ye+++d+++++++sws+n++sf+vl++ ef++++Lpk+Fkh+nf+SF+RQLn+YgF+kv+ e+ weF+++ F +g+ +ll++i+
Dca23163.1 15 FLTKTYEMVDDPTTDSIVSWSSNNRSFIVLNPPEFSRDLLPKFFKHNNFSSFIRQLNTYGFRKVDPEQ---------WEFQNDDFIRGQPHLLKNIH 102
9***************************************************************9998.........******************** PP
XXXX CS
HSF_DNA-bind 99 rkks 102
r+k
Dca23163.1 103 RRKP 106
*985 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009408 | Biological Process | response to heat |
GO:0009733 | Biological Process | response to auxin |
GO:0009958 | Biological Process | positive gravitropism |
GO:0048527 | Biological Process | lateral root development |
GO:0048530 | Biological Process | fruit morphogenesis |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 390 aa
Download sequence Send
to blast |
MMDESQGGSH ALPPFLTKTY EMVDDPTTDS IVSWSSNNRS FIVLNPPEFS RDLLPKFFKH 60 NNFSSFIRQL NTYGFRKVDP EQWEFQNDDF IRGQPHLLKN IHRRKPVHSH SMSSLHGQVS 120 ANPVNDSERQ KYKNDIERLK NEKESLLLEL QRQRKEELGV ESEVQILKER LLHMDQWQSG 180 LVSYLSRILQ KPDLGNIVPQ VENHDRKRRF SRPDQFHDDT TSKDSMGNLL DLDITHLERL 240 EYCLGFWENL VHEIRERFAH TTSPLELAES TTCPDSPAIS YTQLNLDVPH SSSRIDVNSD 300 PPSTAVQRKE HEAGTASAVP QRVNDVFWEQ FLTENPGSAD AQEVQSERKD AGVKEKDSSR 360 LIDQGRYWWN IRNNSNLADN VGQITSAGRS
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
2ldu_A | 5e-26 | 7 | 104 | 12 | 120 | Heat shock factor protein 1 |
5d5u_B | 5e-26 | 8 | 104 | 22 | 129 | Heat shock factor protein 1 |
5d5v_B | 5e-26 | 8 | 104 | 22 | 129 | Heat shock factor protein 1 |
5d5v_D | 5e-26 | 8 | 104 | 22 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). May be involved in general response to auxin. {ECO:0000269|PubMed:18381353}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By heat and cold stresses and the herbicide 2,4-dichlorophenoxyacetic acid (2,4-D, auxin analog). {ECO:0000269|PubMed:18381353}. |