PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca23028.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 524aa    MW: 58841.6 Da    PI: 6.4561
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca23028.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.84e-13376423355
                 HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 ++h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Dca23028.1 376 MNHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAISYITELQ 423
                 689************************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.9E-2951270IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474598.77E-19371436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.149373422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-10376423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.55E-13376427No hitNo description
Gene3DG3DSA:4.10.280.105.0E-18377437IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-16379428IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MSEILRLNDE DKVIIEDVVG VEALKFLISV ASDEFLLELN HSSDEFGNFE QKLCQIIEDD  60
VDFGWNYGII WKVGRCKDGR QVLYCGDGRF RDSYSRVDGE ISERRCKAST IKENGGSSLE  120
LTGHSTSVLT TRPGHFQYEG ISEKGAIRRR VLERLHACFG GCKRSNVNGF SATFDDVCDV  180
GMLYFVSKYY VFSLDHSLGP VVESFASGRS IWVSDSVACL DRYQSRARLG KTAGIQTLVF  240
VPLRNGVLEL GSVRRVGEES SFVENVKRMF GESESFPNTR LGPKIFGREL SLGGPKLHVK  300
GTSFAPKVEE VDASFLEESS RVDDDCKRKF SEIINFVDLN QGSRETTEEI EVLVKAGDSK  360
PRKRGRKPGN GREEAMNHVE AERQRREKLN QRFYALRAVV PNISKMDKAS LLGDAISYIT  420
ELQSKVRVLE AEKETSNAAE KKTSIIPEIE FRRREDSEAL VHVSFPLDVH PVSRVVRAMR  480
GLEIIAPEAE ISTTDNEFVH TFTIKPQHGM AENLKEKLMA ALSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-28371433264Transcription factor MYC2
5gnj_B5e-28371433264Transcription factor MYC2
5gnj_E5e-28371433264Transcription factor MYC2
5gnj_F5e-28371433264Transcription factor MYC2
5gnj_G5e-28371433264Transcription factor MYC2
5gnj_I5e-28371433264Transcription factor MYC2
5gnj_M5e-28371433264Transcription factor MYC2
5gnj_N5e-28371433264Transcription factor MYC2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021764267.11e-161transcription factor bHLH3-like
RefseqXP_021764268.11e-161transcription factor bHLH3-like
RefseqXP_021764269.11e-161transcription factor bHLH3-like
RefseqXP_021764270.11e-161transcription factor bHLH3-like
TrEMBLA0A0K9Q9G31e-147A0A0K9Q9G3_SPIOL; Uncharacterized protein
STRINGXP_010679205.11e-160(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-95bHLH family protein