PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca21633.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family M-type_MADS
Protein Properties Length: 357aa    MW: 40053.2 Da    PI: 6.5142
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca21633.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.91.5e-191053245
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                + en+s rq t+skR++gilKKAeEL +LCd++  +++fs+ gk
  Dca21633.1 10 KLENSSGRQATYSKRKQGILKKAEELATLCDIDLVLVMFSPGGK 53
                679*************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.539153IPR002100Transcription factor, MADS-box
SMARTSM004322.5E-26160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.45E-25290IPR002100Transcription factor, MADS-box
CDDcd002662.62E-25283No hitNo description
PRINTSPR004041.2E-15323IPR002100Transcription factor, MADS-box
PfamPF003191.7E-181154IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-152338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-153859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MGRVKLDIKK LENSSGRQAT YSKRKQGILK KAEELATLCD IDLVLVMFSP GGKPSVRCGK  60
SSIEEVIAKY NQLPPHERTK KLHEIFTQLW FCFLFPSVAP FDFASAPTVK DLTEQAARIQ  120
TRIAEIHERL RYWSSPDKVS DLELVMQMED SLQKSLDRVQ KAKLPFHVSD QQLQQLFWTS  180
SDDIPNTVLS SDSKLLTQRA MESYTGSASG SNFGNPSTGS KSEENSPGQL STTDNVVQCQ  240
DAFQGLQFDG QYPYLQQSVN MQSVNMQGTT NLQAMLGIDQ HKFQIPAFDV NGNYQPTVWP  300
GTTNYLPPET PAQEPAFGYY LSYQKSSVPA PALPTIYERM ARDSSHLLFD NALNHHV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021739930.11e-129agamous-like MADS-box protein AGL30
RefseqXP_021739931.11e-129agamous-like MADS-box protein AGL30
TrEMBLA0A0K9QDY12e-72A0A0K9QDY1_SPIOL; Uncharacterized protein
STRINGXP_010683156.11e-125(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.22e-56AGAMOUS-like 30