PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Basic Information? help Back to Top

TF ID

Dca2142.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

Trihelix

Protein Properties

Length: 468aa MW: 53592.3 Da PI: 6.9554

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca2142.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	44.5	4.2e-14	3	49	39	87
trihelix 39 rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea Dca2142.1 3 EEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 49 69***************************98..55667*****85 PP
2	trihelix	60.8	3.4e-19	256	334	1	78
trihelix 1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessst 78 +W+++ev Li++r++me+r+++ g +++ lWe+++ km+ g+ rs+ Ck+kw+++n +++ k+ +k +s+++++ Dca2142.1 256 QWPEHEVTRLIQVRTSMESRFQQcGFSEEVLWEDIATKMAYLGYDRSAMVCKQKWDSINDYFRGSKRPLIKDESKKKRK 334 7*******************967899************************************9999986666554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	7.8E-9	3	50	No hit	No description
PROSITE profile	PS50090	6.365	253	314	IPR017877	Myb-like domain
CDD	cd12203	4.25E-22	255	321	No hit	No description
Pfam	PF13837	2.5E-13	255	327	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence Send to blast
MGEEHGYQRS GKKCREKFEN LYKYYKKTKE GKAGRQDGKH YRFFRQLEAL YGGSGSDHHP 60 TSLTSETQIT ENTPQFHALP TQPSHASLVV PPHAAPRGCD TSVSLSNSFD FETSSTDNDE 120 LNGSMESNDG SMETNNNKKK KKRGYGGSGN WKAKIKEFID EQMRKIMEKQ ETWLDKMMNT 180 LESRERERMV REEEWRKQEA DRVEREQKFW ASERAWIEAR DSALMSALDK LTASSNINNN 240 INNNDDITTN GGRNNQWPEH EVTRLIQVRT SMESRFQQCG FSEEVLWEDI ATKMAYLGYD 300 RSAMVCKQKW DSINDYFRGS KRPLIKDESK KKRKENYNGI HPQNHHHHNN NRSNEGGGGI 360 YMNQLSGFND TTTNNNNNNN NNNNNNCEIN EPRLQLNEES SSPSSHNSNV NNNNNNNGSN 420 NNSNNVNGVG NVMNDSCLRF FLGDHGESNL GWESNYGLKL NNGDNHCA

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence Send to blast

MGEEHGYQRS GKKCREKFEN LYKYYKKTKE GKAGRQDGKH YRFFRQLEAL YGGSGSDHHP  60
TSLTSETQIT ENTPQFHALP TQPSHASLVV PPHAAPRGCD TSVSLSNSFD FETSSTDNDE  120
LNGSMESNDG SMETNNNKKK KKRGYGGSGN WKAKIKEFID EQMRKIMEKQ ETWLDKMMNT  180
LESRERERMV REEEWRKQEA DRVEREQKFW ASERAWIEAR DSALMSALDK LTASSNINNN  240
INNNDDITTN GGRNNQWPEH EVTRLIQVRT SMESRFQQCG FSEEVLWEDI ATKMAYLGYD  300
RSAMVCKQKW DSINDYFRGS KRPLIKDESK KKRKENYNGI HPQNHHHHNN NRSNEGGGGI  360
YMNQLSGFND TTTNNNNNNN NNNNNNCEIN EPRLQLNEES SSPSSHNSNV NNNNNNNGSN  420
NNSNNVNGVG NVMNDSCLRF FLGDHGESNL GWESNYGLKL NNGDNHCA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021743338.1	1e-151	trihelix transcription factor PTL-like
TrEMBL	A0A0K9QYQ7	1e-120	A0A0K9QYQ7_SPIOL; Uncharacterized protein
STRING	XP_010683862.1	1e-123	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	3e-68	Trihelix family protein