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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca19769.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | HSF | ||||||||
Protein Properties | Length: 489aa MW: 54515.8 Da PI: 5.4727 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 113.6 | 1.3e-35 | 24 | 114 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k+y++++d ++++++sws+++nsf+v+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ weF++++F k++k+ll++i+ Dca19769.1 24 FLLKTYDMVDDTSTDDIVSWSNTNNSFIVWNPLEFARVLLPTYFKHNNFSSFIRQLNTYGFHKIDPER---------WEFQNEEFVKDQKHLLKNIH 111 9****************************************************************999.........******************** PP XXX CS HSF_DNA-bind 99 rkk 101 r+k Dca19769.1 112 RRK 114 *98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 3.67E-35 | 20 | 113 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 3.2E-38 | 20 | 113 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.4E-59 | 20 | 113 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 8.7E-31 | 24 | 113 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.4E-19 | 24 | 47 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.4E-19 | 62 | 74 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 63 | 87 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.4E-19 | 75 | 87 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 489 aa Download sequence Send to blast |
MDLMPSISIV NTAGGGGGGG PAPFLLKTYD MVDDTSTDDI VSWSNTNNSF IVWNPLEFAR 60 VLLPTYFKHN NFSSFIRQLN TYGFHKIDPE RWEFQNEEFV KDQKHLLKNI HRRKPIHSHS 120 HPPPDPERAA FEEEIEKLTR EKNELDAKVS SFRMRECLAK SHLEDIKQRL SGMNQRQENL 180 LTLLQKSVLD PTFVELFTQK IDAMYLSAYN KKRRLPPADN ILSVPDNYFA DYQIHGKHDV 240 SSLHQQDMSN KLNLELSTAV SNINLVSNST HSSNEDWGSP PRKSSGVELN DAEMQTSTLP 300 FATEPVKLSD TDTCLAFKID SSPADKIGSK EIPPLQESVV LSEEAEGHIC CQLNLSLASS 360 SIQVDPNASS SRITQMDLDI AGTTEPRPES SADKRDRITG SLKDNLPAIN ATKNTSLFHG 420 TDKSKQGSTP AAPPRVNDLF WEQFLTERPG SSDAEEASSS YRALPNDEDD KGSNHGMSKT 480 AKNLGKLTL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 6e-22 | 15 | 113 | 17 | 129 | Heat shock factor protein 1 |
5d5v_B | 6e-22 | 15 | 113 | 17 | 129 | Heat shock factor protein 1 |
5d5v_D | 6e-22 | 15 | 113 | 17 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010673379.1 | 0.0 | PREDICTED: heat stress transcription factor A-5 | ||||
TrEMBL | A0A0J8CRZ7 | 0.0 | A0A0J8CRZ7_BETVU; Uncharacterized protein | ||||
STRING | XP_010673379.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13980.1 | 1e-120 | HSF family protein |