PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca18912.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

G2-like

Protein Properties

Length: 292aa MW: 32059.3 Da PI: 6.9535

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca18912.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.5	1.5e-33	26	80	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt+eLHerF++av+qLGG++kAtPktil++m+vkgLtl+h+kSHLQkYR+ Dca18912.1 26 KPRLRWTSELHERFIDAVSQLGGPKKATPKTILRTMGVKGLTLYHLKSHLQKYRM 80 79****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.962	23	83	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-31	23	80	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.18E-16	25	81	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-24	26	81	IPR006447	Myb domain, plants
Pfam	PF00249	4.8E-9	28	79	IPR001005	SANT/Myb domain
Pfam	PF14379	6.9E-25	123	169	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009567	Biological Process	double fertilization forming a zygote and endosperm
GO:0010628	Biological Process	positive regulation of gene expression
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MYTTSHGTWE SVGGEEACVV LTTDPKPRLR WTSELHERFI DAVSQLGGPK KATPKTILRT 60 MGVKGLTLYH LKSHLQKYRM GKQPSKEATE NSKDASFKGD IHDTDSSTSS AKIKDQELND 120 GNQVTEALRV QMEVQRRLHE QLEVPRHLQL RIEAQGKYLH SLVEKACKAL SDQAAVSSYG 180 FEAAHEELSE LAIRISASES SGLVLPDTVK MPSSLAPVTP LHDVRNAPMV SAWISDCSVD 240 SCLTSMESPV SPLGAPSHPF AAKKRTRHVF GNGDMIPIDC SSDQVGWIMA NI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-19	26	82	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-19	26	82	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-19	26	82	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-19	26	82	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269\|PubMed:15634699, ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002323774.2	1e-121	protein PHR1-LIKE 3
Swissprot	Q8LAJ7	8e-99	PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBL	A9PEQ8	1e-120	A9PEQ8_POPTR; Uncharacterized protein
STRING	XP_002518104.1	1e-119	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	1e-101	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590]