PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Basic Information? help Back to Top

TF ID

Dca18404.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 358aa MW: 41222.2 Da PI: 7.9606

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca18404.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	45.2	3e-14	75	171	1	91
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 ++Y+++++ +GFs+r + ++ + ++r f Cs++g++ +++ + + ++++ trt+C+a+++ k++ dg+w+v + +HnH l+p Dca18404.1 75 DMYRKHSQVLGFSIRLGTIRRVaGPGSREYERYFLCSNQGTTGGNSSVrsnsdsDAIQTKNTSLTRTKCNARVRAKLQ-DGEWVVVDHIVQHNHVLTP 171 58****************9943444568899***99877666666666666777999***********.*************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.3E-11	76	171	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MIVDQTVVSI GNEIEVEDRI PDETFVSIED EIEVEDEDPN SEKSPNNEVT TTEYDFDISG 60 SLVGQSDKSW LVLYDMYRKH SQVLGFSIRL GTIRRVAGPG SREYERYFLC SNQGTTGGNS 120 SVRSNSDSDA IQTKNTSLTR TKCNARVRAK LQDGEWVVVD HIVQHNHVLT PHQWQHHHRS 180 ERRITSDETD IIKVMTQAKI PPSIQYRYLS VSSGGTEFVG HIKKDHYNFV HRLKRRGVEG 240 GDASTLINML SKRQADDPGF YFKVMFDEES RLCRLFWRDS MMKEDYLLYH DVVIFDTTYR 300 TNKYNLICGA FVGINNHWST TKGRGQRKKV QFKKTKRKIG TTSTCTENAP YTPNPRLF

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MIVDQTVVSI GNEIEVEDRI PDETFVSIED EIEVEDEDPN SEKSPNNEVT TTEYDFDISG  60
SLVGQSDKSW LVLYDMYRKH SQVLGFSIRL GTIRRVAGPG SREYERYFLC SNQGTTGGNS  120
SVRSNSDSDA IQTKNTSLTR TKCNARVRAK LQDGEWVVVD HIVQHNHVLT PHQWQHHHRS  180
ERRITSDETD IIKVMTQAKI PPSIQYRYLS VSSGGTEFVG HIKKDHYNFV HRLKRRGVEG  240
GDASTLINML SKRQADDPGF YFKVMFDEES RLCRLFWRDS MMKEDYLLYH DVVIFDTTYR  300
TNKYNLICGA FVGINNHWST TKGRGQRKKV QFKKTKRKIG TTSTCTENAP YTPNPRLF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	XP_010695927.1	2e-85	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	9e-29	FAR1-related sequence 5