PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca17464.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family Trihelix
Protein Properties Length: 511aa    MW: 58435.7 Da    PI: 5.6187
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca17464.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix83.33.1e-2664148187
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                 rW++qe+laL+e+r++m+  +r++ +k plW++vs++m++ g++rs+k+C+ek+en+ k+ k++k+ +++r  +  +t+++f+qlea
  Dca17464.1  64 RWPEQETLALLEIRSNMDALFRDSVAKSPLWDDVSRRMAALGYHRSAKKCREKFENIYKYNKRLKTASSSR--PIGKTYRFFNQLEA 148
                 8********************************************************************97..66678*******85 PP

2trihelix91.68e-29332413186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 rW+k+ev aLi+++++me++++r    +plWe+vs +m++ g+ r++k+Ckekwen+nk+y+++k+++k+r + +s+tcpyf+ l+
  Dca17464.1 332 RWPKEEVEALIRIKTSMESQYQRM---GPLWEDVSVAMKSVGYDRNAKKCKEKWENINKYYRRVKDNNKQR-PVDSKTCPYFHLLD 413
                 8*********************98...9*****************************************98.9999*******987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.04461123IPR001005SANT/Myb domain
PROSITE profilePS500907.01563121IPR017877Myb-like domain
PfamPF138377.9E-1863149No hitNo description
CDDcd122031.33E-1964128No hitNo description
PROSITE profilePS500907.352325386IPR017877Myb-like domain
SMARTSM007172.3329388IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.600.001330386IPR009057Homeodomain-like
PfamPF138373.7E-20331415No hitNo description
CDDcd122031.43E-21331393No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010192Biological Processmucilage biosynthetic process
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MQENSESLEN SGEGRENELK TVEEGVKNGE VVKKEEGNSN SCAVNVFTAE FCRNSSSGSG  60
GNNRWPEQET LALLEIRSNM DALFRDSVAK SPLWDDVSRR MAALGYHRSA KKCREKFENI  120
YKYNKRLKTA SSSRPIGKTY RFFNQLEALD HNQISLQSLS PEQSGTTMKG ASLAVTPVSS  180
HPPYVPHMAI PLSVNYDTST PSSSGSESEN TRKKKRKWAS LFDRLMKSVL EKQEELHKKF  240
LEAFEKCEKE RLAREEVWKV QEIERLRKHH DILMQERSVS AAKDAAVLAF LQKISQDEKF  300
SEILGKMEEN PVQELSLECK RERDDGENSS SRWPKEEVEA LIRIKTSMES QYQRMGPLWE  360
DVSVAMKSVG YDRNAKKCKE KWENINKYYR RVKDNNKQRP VDSKTCPYFH LLDSLYGMRT  420
RSSENNLENS SCSLKPEELL IHMMNNNNSS SNHSKQQPSQ QAEYPSNVDP SHNGNSSYKD  480
EDEDEEENEN EVSGEDGNDG DDYQSSVPSD P
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00243DAPTransfer from AT1G76880Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680281.11e-180PREDICTED: trihelix transcription factor GT-2-like
SwissprotQ391171e-105TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLG5DXD40.0G5DXD4_SILLA; DNA-binding domain-containing protein (Fragment)
TrEMBLG5DXD50.0G5DXD5_SILLA; DNA-binding domain-containing protein (Fragment)
STRINGXP_010680281.11e-179(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-104Trihelix family protein