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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca17464.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | Trihelix | ||||||||
Protein Properties | Length: 511aa MW: 58435.7 Da PI: 5.6187 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 83.3 | 3.1e-26 | 64 | 148 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+e+r++m+ +r++ +k plW++vs++m++ g++rs+k+C+ek+en+ k+ k++k+ +++r + +t+++f+qlea Dca17464.1 64 RWPEQETLALLEIRSNMDALFRDSVAKSPLWDDVSRRMAALGYHRSAKKCREKFENIYKYNKRLKTASSSR--PIGKTYRFFNQLEA 148 8********************************************************************97..66678*******85 PP | |||||||
2 | trihelix | 91.6 | 8e-29 | 332 | 413 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k+ev aLi+++++me++++r +plWe+vs +m++ g+ r++k+Ckekwen+nk+y+++k+++k+r + +s+tcpyf+ l+ Dca17464.1 332 RWPKEEVEALIRIKTSMESQYQRM---GPLWEDVSVAMKSVGYDRNAKKCKEKWENINKYYRRVKDNNKQR-PVDSKTCPYFHLLD 413 8*********************98...9*****************************************98.9999*******987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.044 | 61 | 123 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 7.015 | 63 | 121 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 7.9E-18 | 63 | 149 | No hit | No description |
CDD | cd12203 | 1.33E-19 | 64 | 128 | No hit | No description |
PROSITE profile | PS50090 | 7.352 | 325 | 386 | IPR017877 | Myb-like domain |
SMART | SM00717 | 2.3 | 329 | 388 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 0.001 | 330 | 386 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 3.7E-20 | 331 | 415 | No hit | No description |
CDD | cd12203 | 1.43E-21 | 331 | 393 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010192 | Biological Process | mucilage biosynthetic process | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 511 aa Download sequence Send to blast |
MQENSESLEN SGEGRENELK TVEEGVKNGE VVKKEEGNSN SCAVNVFTAE FCRNSSSGSG 60 GNNRWPEQET LALLEIRSNM DALFRDSVAK SPLWDDVSRR MAALGYHRSA KKCREKFENI 120 YKYNKRLKTA SSSRPIGKTY RFFNQLEALD HNQISLQSLS PEQSGTTMKG ASLAVTPVSS 180 HPPYVPHMAI PLSVNYDTST PSSSGSESEN TRKKKRKWAS LFDRLMKSVL EKQEELHKKF 240 LEAFEKCEKE RLAREEVWKV QEIERLRKHH DILMQERSVS AAKDAAVLAF LQKISQDEKF 300 SEILGKMEEN PVQELSLECK RERDDGENSS SRWPKEEVEA LIRIKTSMES QYQRMGPLWE 360 DVSVAMKSVG YDRNAKKCKE KWENINKYYR RVKDNNKQRP VDSKTCPYFH LLDSLYGMRT 420 RSSENNLENS SCSLKPEELL IHMMNNNNSS SNHSKQQPSQ QAEYPSNVDP SHNGNSSYKD 480 EDEDEEENEN EVSGEDGNDG DDYQSSVPSD P |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00243 | DAP | Transfer from AT1G76880 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010680281.1 | 1e-180 | PREDICTED: trihelix transcription factor GT-2-like | ||||
Swissprot | Q39117 | 1e-105 | TGT2_ARATH; Trihelix transcription factor GT-2 | ||||
TrEMBL | G5DXD4 | 0.0 | G5DXD4_SILLA; DNA-binding domain-containing protein (Fragment) | ||||
TrEMBL | G5DXD5 | 0.0 | G5DXD5_SILLA; DNA-binding domain-containing protein (Fragment) | ||||
STRING | XP_010680281.1 | 1e-179 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 1e-104 | Trihelix family protein |