PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca15904.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family BES1
Protein Properties Length: 697aa    MW: 78196 Da    PI: 5.6841
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca15904.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822130.32.3e-40721771110
      DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslq.ssl 98 
                 gg++r ++ +E+E++k+RER+RRai+aki++GLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++  s+       +g s   +p++  + ++l
  Dca15904.1  72 GGAKRPRPLEEKERTKLRERHRRAITAKILTGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSRSQGS-----GGPSDPSTPTTAPSpQVL 165
                 57899999**************************************************************555555.....333333333333333344 PP

      DUF822  99 kssalaspvesy 110
                   +a a+p ++ 
  Dca15904.1 166 PQQARAAPFKEV 177
                 444444444433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056874.2E-3674196IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514451.55E-168255692IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.806.6E-185257694IPR013781Glycoside hydrolase, catalytic domain
PfamPF013733.3E-97263680IPR001554Glycoside hydrolase, family 14
PRINTSPR007508.0E-63294308IPR001554Glycoside hydrolase, family 14
PRINTSPR007508.0E-63315333IPR001554Glycoside hydrolase, family 14
PRINTSPR007508.0E-63337358IPR001554Glycoside hydrolase, family 14
PRINTSPR007508.0E-63430452IPR001554Glycoside hydrolase, family 14
PRINTSPR007508.0E-63503522IPR001554Glycoside hydrolase, family 14
PRINTSPR007508.0E-63537553IPR001554Glycoside hydrolase, family 14
PRINTSPR007508.0E-63554565IPR001554Glycoside hydrolase, family 14
PRINTSPR007508.0E-63572595IPR001554Glycoside hydrolase, family 14
PRINTSPR007508.0E-63612634IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    Send to blast
MATDMQKLIG TSEDDDDEEM DMETKGEYDD EEGKNISASI MANMDGRIGT ISGNDQFHYH  60
SEYQEQSCSQ GGGAKRPRPL EEKERTKLRE RHRRAITAKI LTGLRRHGNY NLRVRADIND  120
VIAALAREAG WVVLPDGTTF PSRSQGSGGP SDPSTPTTAP SPQVLPQQAR AAPFKEVFTG  180
YQSSLEYKTC QGKGDLVTVT SPYNVSSSKH FHAFSTVGSI VDGSEIDPLI NSSVYTAGNK  240
LVVDPPSRLV EHDVSGTPYI PVYMMLPLGV INIKCELSDP DGLLKQLRTL KLANVDGVMV  300
DCWWGVVEAH APQEYNWNGY KRLFQIVRDL ELKLQVVMSF HECGSNFLDD VCIPLPHWVV  360
EIGHSNPDIF FTDKEGRRNP ECLSWGIDKE RVLRGRTAIE VYFDFMRSFR IEFDQFLEDG  420
IFSMVEVGLG PSGDLRYPSH PVKHGWRYPG IGEFQCYDQY LMKSLRKAAD ARGHSFWGKP  480
PTNAGFYNSR PNETAFFCDG GDYDGYFGRF FLNWYSRVLV DHADQILSLA KLAFEGTCIA  540
VKLSGIHWWY KTASHAAELT AGFYNPCNRN GYAALMSMLK KHGAVLAFTN SEVGISGELG  600
DYSEALSDPG GVAWQVFNAA WDESLPVASA NSLPCHDREV YNKILENAKS NNDPDKRHLL  660
SFGYQRLSPQ LMERHNMVEF EMFIKKMHGE AVRDELN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1q6g_A1e-14525969011444beta-amylase
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17478KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021767065.10.0beta-amylase 7-like isoform X1
RefseqXP_021767066.10.0beta-amylase 7-like isoform X1
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLA0A0K9RFM40.0A0A0K9RFM4_SPIOL; Beta-amylase
STRINGXP_010670436.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]