PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca14666.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family HD-ZIP
Protein Properties Length: 829aa    MW: 90997 Da    PI: 6.4489
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca14666.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.52.4e-182178457
                -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                  ++t+eq+e+Le+l+  +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Dca14666.1 21 YVRYTPEQVEALERLYSDCPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 78
                6789****************************************************97 PP
2START163.41.6e-511653732205
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 
                 +aee+++e+++ka+ ++  W +++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++++v ssg  ga++l +++l
  Dca14666.1 165 IAEETLAEFLSKATGTAIEWIQMPGMKPGPDSIGIIAISHGCTGVAARACGLVSLEPT-RVAEILKDRPSWYRDCRAVDVMNVMSSGngGAIELLYMQL 262
                 7899******************************************************.8888888888****************************** PP

                 TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHH CS
       START  99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaega 193
                 +a+++l+p Rdf+  Ry+  l++g+ vi+++S++++q+ p+    +++vRae   Sg+li+p+++g+s +++v+h+dl+ + ++++lr+l++s++  ++
  Dca14666.1 263 YAPTTLAPaRDFWLMRYTSFLEDGSVVICERSLNNTQNGPSmpsVQHFVRAEIMASGYLIRPCDGGGSIIHIVDHMDLEPWRVPEVLRPLYESSTLLAQ 361
                 ****************************************9888899**************************************************** PP

                 HHHHHHTXXXXX CS
       START 194 ktwvatlqrqce 205
                 +t++a+l+++++
  Dca14666.1 362 RTTMAALRHLRQ 373
                 *******99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.2891579IPR001356Homeobox domain
SMARTSM003899.0E-151783IPR001356Homeobox domain
CDDcd000869.64E-162080No hitNo description
SuperFamilySSF466893.85E-162081IPR009057Homeodomain-like
PfamPF000466.8E-162178IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.0E-182278IPR009057Homeodomain-like
CDDcd146862.07E-672111No hitNo description
PROSITE profilePS5084823.403155383IPR002913START domain
CDDcd088751.94E-75159374No hitNo description
Gene3DG3DSA:3.30.530.201.1E-19163370IPR023393START-like domain
SuperFamilySSF559616.18E-35164376No hitNo description
SMARTSM002346.7E-34164374IPR002913START domain
PfamPF018524.6E-49165373IPR002913START domain
PfamPF086701.0E-50686828IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 829 aa     Download sequence    Send to blast
MMAVSSASRD AHKMGMDAGK YVRYTPEQVE ALERLYSDCP KPSSLRRQQL IRECPILSNI  60
EPKQIKVWFQ NRRCREKQRK ESSRLQAVNR KLTAMNKLLM EENDRLQKQV AHLVYENSYF  120
RQQTQNAGTL ATTDTSCESV VTSGHQQATS QRPPKDASPA GLVSIAEETL AEFLSKATGT  180
AIEWIQMPGM KPGPDSIGII AISHGCTGVA ARACGLVSLE PTRVAEILKD RPSWYRDCRA  240
VDVMNVMSSG NGGAIELLYM QLYAPTTLAP ARDFWLMRYT SFLEDGSVVI CERSLNNTQN  300
GPSMPSVQHF VRAEIMASGY LIRPCDGGGS IIHIVDHMDL EPWRVPEVLR PLYESSTLLA  360
QRTTMAALRH LRQISQEISQ PNVTGFGRRP AALRALSQRL SKGFNEAVNG FMDEGWSVMD  420
SDGIDDVSIL VNSSPSKLLA ANNYYNNGFP SVGTSVLCAR ASMLLKDVPP AVLLRFLREH  480
RSEWADSGID AYAAAAVKAA PCSLPVGRTG CVGGQFMEVV RLENLNQYRD DMFMPSDIFL  540
LQLCSGVDEN AVGASAELVF APIDASFSDD APLLPSGFRI IPVDSSKDVS SPKCTLDLTS  600
ALEVGPAGNK AFGDSNGSGN TKSVMTIAFQ FAFEIHLQDS VAAMARQYVR SIISSVQRVA  660
SAVSPSRFGG SVTGSPLSHG TPEVQTLARW ICQSYRFYLG VELLKPSPEG GESVLKSLWH  720
HSDAMLCCSM KALPVFTFAN QAGLDMLETT LVALQDITLE KIFDEQGRKT LFAELPQIMQ  780
QGFVCLQGGI CMSSMGRPIS YDRAVAWKVF NDAEDAQCMC FMFINWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021739137.10.0homeobox-leucine zipper protein ATHB-8-like
RefseqXP_021739138.10.0homeobox-leucine zipper protein ATHB-8-like
SwissprotQ391230.0ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8
TrEMBLA0A0K9QMP50.0A0A0K9QMP5_SPIOL; Uncharacterized protein
STRINGXP_010668539.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.10.0homeobox gene 8
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Hategan L,Godza B,Kozma-Bognar L,Bishop GJ,Szekeres M
    Differential expression of the brassinosteroid receptor-encoding BRI1 gene in Arabidopsis.
    Planta, 2014. 239(5): p. 989-1001
    [PMID:24488524]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Kakehi J, et al.
    Mutations in ribosomal proteins, RPL4 and RACK1, suppress the phenotype of a thermospermine-deficient mutant of Arabidopsis thaliana.
    PLoS ONE, 2015. 10(1): p. e0117309
    [PMID:25625317]
  5. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  6. Liu S, et al.
    Expression of wild-type PtrIAA14.1, a poplar Aux/IAA gene causes morphological changes in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 388
    [PMID:26082787]
  7. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]
  8. Yamazaki K, et al.
    Suppression of DELLA signaling induces procambial cell formation in culture.
    Plant J., 2018. 94(1): p. 48-59
    [PMID:29383774]