PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Dca12897.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 748aa MW: 86614.7 Da PI: 8.2765

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca12897.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	47.8	4.8e-15	49	142	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 kfY+ YA +GF+ r+ ++++ r+g+ + vC++eg+ e++k++ + r+++ +r+gC+a+++ + +g+ +v+ +++ HnHel+ Dca12897.1 49 KFYKIYALACGFTSRRWSTSRW-RDGTLQFKLVVCNREGFWESKKQRkakaegCVGDGRKNKLQRIGCRARIRFFVK-NGVIRVDVFNEFHNHELV 142 6************9998887.8888999******99998885555555555569**********999.**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-11	49	142	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.3E-29	265	356	IPR018289	MULE transposase domain
PROSITE pattern	PS01007	0	329	353	IPR001207	Transposase, mutator type
PROSITE profile	PS50966	10.212	546	582	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.3E-8	547	580	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.1E-5	557	584	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006313	Biological Process	transposition, DNA-mediated
GO:0003677	Molecular Function	DNA binding
GO:0004803	Molecular Function	transposase activity
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 748 aa Download sequence Send to blast
MGECYQDGYG GGVNGVEEQF GPHDFCTRLE KEFTPFVGQE FDDLETGIKF YKIYALACGF 60 TSRRWSTSRW RDGTLQFKLV VCNREGFWES KKQRKAKAEG CVGDGRKNKL QRIGCRARIR 120 FFVKNGVIRV DVFNEFHNHE LVSPEHRQFQ KMARHLTKYH KRLILANSRL NIGATKTYRM 180 FKELVDGFEN VGATLNDFKN FKRDVNCFIH DRDGQLFVDH LVNLKETRPG FYFDYDVDNK 240 GRLRRVIWAD DYARKSYAIF GDGLAFDPTY STNKYSMVFT PFTGVDNHRK SITFGGALIA 300 SEDYESFVWV FTRFLIAMEG KEPSYIITDQ DPGIIKAVKE VFTIARHRFC MWHIMNKVPS 360 KFGVTRPDYQ EFLKKLNGII WDREISGDDF DVQWDEIMVN HGVGAADWFK ETFEIRRQWV 420 MAHCKDIKMG GIMRTTQRSE SENNFFKRFE CKSGTLVEFW MRFESAMEQQ RHNHRGLDNA 480 NSHSMPQLLG CFDIEKDAAR IFTHVIFDEF QEELRFSMSS CICKGYREDG SYEVTLVRDS 540 VRDRVFEVRY NSDTNDAQCS CGLYDHNGII CRHVLWILSC HGLKKIPEGL VARRWRKNAL 600 KSLEESVLVG SNEEDGKSVE MSKLWEEFQE TLGVVRGLDG DKIMKLTTLI REFREAHCCD 660 AIVPLSKDAE IEELLGVKSS SAVSILPPKQ SKNKGSGKRM LSNKTKAVEI AKKAKRLCNN 720 CKQMAHHDKR NCPNAFVESR DDVVESVC

Sequence ? help Back to Top

Protein Sequence Length: 748 aa Download sequence Send to blast

MGECYQDGYG GGVNGVEEQF GPHDFCTRLE KEFTPFVGQE FDDLETGIKF YKIYALACGF  60
TSRRWSTSRW RDGTLQFKLV VCNREGFWES KKQRKAKAEG CVGDGRKNKL QRIGCRARIR  120
FFVKNGVIRV DVFNEFHNHE LVSPEHRQFQ KMARHLTKYH KRLILANSRL NIGATKTYRM  180
FKELVDGFEN VGATLNDFKN FKRDVNCFIH DRDGQLFVDH LVNLKETRPG FYFDYDVDNK  240
GRLRRVIWAD DYARKSYAIF GDGLAFDPTY STNKYSMVFT PFTGVDNHRK SITFGGALIA  300
SEDYESFVWV FTRFLIAMEG KEPSYIITDQ DPGIIKAVKE VFTIARHRFC MWHIMNKVPS  360
KFGVTRPDYQ EFLKKLNGII WDREISGDDF DVQWDEIMVN HGVGAADWFK ETFEIRRQWV  420
MAHCKDIKMG GIMRTTQRSE SENNFFKRFE CKSGTLVEFW MRFESAMEQQ RHNHRGLDNA  480
NSHSMPQLLG CFDIEKDAAR IFTHVIFDEF QEELRFSMSS CICKGYREDG SYEVTLVRDS  540
VRDRVFEVRY NSDTNDAQCS CGLYDHNGII CRHVLWILSC HGLKKIPEGL VARRWRKNAL  600
KSLEESVLVG SNEEDGKSVE MSKLWEEFQE TLGVVRGLDG DKIMKLTTLI REFREAHCCD  660
AIVPLSKDAE IEELLGVKSS SAVSILPPKQ SKNKGSGKRM LSNKTKAVEI AKKAKRLCNN  720
CKQMAHHDKR NCPNAFVESR DDVVESVC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-78	FAR1-related sequence 5