PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Dca11208.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

Trihelix

Protein Properties

Length: 413aa MW: 45828.4 Da PI: 9.4712

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca11208.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	54.8	2.5e-17	48	124	1	73
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrts 73 +Wt++e+laLi +++++ +lrr++l+ ++W++v++ + + +++ qC++k+e+l+kry+ +k++ ++ +s Dca11208.1 48 CWTHEETLALISSYQDKWYSLRRRNLRTADWDAVAEEVtrrcPGQSPAKTSAQCRHKMEKLRKRYRTEKQRISSLQS 124 8**********************************965444445578999****************9998643 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.4E-18	47	128	No hit	No description
PROSITE profile	PS50090	6.493	49	109	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MSSPPPPQPS PSPPPPSSPR ATTAILAVPA PPPPSDPPPP PRKFPAPCWT HEETLALISS 60 YQDKWYSLRR RNLRTADWDA VAEEVTRRCP GQSPAKTSAQ CRHKMEKLRK RYRTEKQRIS 120 SLQSSSNFGI NHNNNRFFGS SWVLFDLIHS MELGSANNDI NLQINNLNNN NNDVAQVDLE 180 VKPFSMHNLN NVVVVDGNHN NNGNNNSSSK KGGDLGNYFD EILLGMNNNN KGKSQNHEFD 240 VRSSAVVQPV KFRVKNHQIS RHDYGGASGG GYDDEFDEGD EYGGGGGGGR GMMPPPGGMK 300 RKSDSYGKYD EMYSSKMVSG VNGSASRKEY EGGSRGGRET TGVGEMVASI KMLGEGLVKM 360 EKMKIEMMRD IEKMRMEMEM RRSQMILESQ QLIVNAFVEG LKKSKKFKPS EID

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MSSPPPPQPS PSPPPPSSPR ATTAILAVPA PPPPSDPPPP PRKFPAPCWT HEETLALISS  60
YQDKWYSLRR RNLRTADWDA VAEEVTRRCP GQSPAKTSAQ CRHKMEKLRK RYRTEKQRIS  120
SLQSSSNFGI NHNNNRFFGS SWVLFDLIHS MELGSANNDI NLQINNLNNN NNDVAQVDLE  180
VKPFSMHNLN NVVVVDGNHN NNGNNNSSSK KGGDLGNYFD EILLGMNNNN KGKSQNHEFD  240
VRSSAVVQPV KFRVKNHQIS RHDYGGASGG GYDDEFDEGD EYGGGGGGGR GMMPPPGGMK  300
RKSDSYGKYD EMYSSKMVSG VNGSASRKEY EGGSRGGRET TGVGEMVASI KMLGEGLVKM  360
EKMKIEMMRD IEKMRMEMEM RRSQMILESQ QLIVNAFVEG LKKSKKFKPS EID

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021768524.1	1e-75	trihelix transcription factor ASIL2-like
TrEMBL	A0A0K9QYJ4	9e-73	A0A0K9QYJ4_SPIOL; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	2e-26	Trihelix family protein