PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca10246.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family Trihelix
Protein Properties Length: 372aa    MW: 42067.4 Da    PI: 9.4698
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca10246.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix476.7e-1511102269
    trihelix   2 WtkqevlaLiearremeerlrrgk........................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 
                 Wt +e++ Liea++ ++er + +k                          + +W++v ++++++g+ rs++qC++kw+nl ++ykki++ ++
  Dca10246.1  11 WTVEETMILIEAKKMDDERRKLNKrpsssmvtsppsnttmtttsspkpVTELRWKWVEEYCWRKGCLRSQNQCNDKWDNLMRDYKKIRDYQR 102
                 **************7777766554556667777777777788887777999************************************99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.771391IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.8E-4529IPR009057Homeodomain-like
PfamPF138375.0E-910101No hitNo description
Gene3DG3DSA:1.10.10.602.8E-46393IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MVMREYRKGN WTVEETMILI EAKKMDDERR KLNKRPSSSM VTSPPSNTTM TTTSSPKPVT  60
ELRWKWVEEY CWRKGCLRSQ NQCNDKWDNL MRDYKKIRDY QRFLLINTNT NHDHHNNNKM  120
INVNVNVKSY WEMDKVERKD KSLPTNMLPH IYQALFEVVD QNSATGSGSG GVTTATTAPS  180
AVVAPSHFLQ LPPPPPPPPT PPALRLPFYS QQPQPQLQPP QIELEAASEQ VLQQEEPSAK  240
RKRKEETTTT MASTQGTTTT VAAPPPTTTT TTTAQQMATT SSTTTTTQLQ EVSSSISRSA  300
SLIAEAIQSN EEKQERRHKE IMHIHETRLR LEESKLEVIQ HGFSGLNDAI NKLANSVLSF  360
VNSSHKSQQG RP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.16e-49Trihelix family protein