PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca10243.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family NF-YA
Protein Properties Length: 466aa    MW: 52450.7 Da    PI: 9.266
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca10243.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.34.6e-32107163158
   CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                 dep++VNaKQy++Il+RRq+Rak+e+e+k   k+rkpylheSRh hAl+R+Rg+gGrF
  Dca10243.1 107 DEPIFVNAKQYHGILRRRQSRAKAESENKA-MKNRKPYLHESRHLHALKRARGCGGRF 163
                 79****************************.9*************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.4E-35105166IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.416106166IPR001289Nuclear transcription factor Y subunit A
PfamPF020457.7E-27108163IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.0E-22109131IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860111131IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.0E-22140163IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5092233.862259463IPR006634TRAM/LAG1/CLN8 homology domain
SMARTSM007241.9E-41259463IPR006634TRAM/LAG1/CLN8 homology domain
PfamPF037981.5E-27263456IPR006634TRAM/LAG1/CLN8 homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MSSSANDCSD SGEVDEQQSH SESASYSTSS IGAPEALHGT SYFPYPAHPP VGALGQAAYP  60
YPPYPDPYYR GVFPYDPQSY PGQPYPTQPM LMGIQQAGLP LPSDALDEPI FVNAKQYHGI  120
LRRRQSRAKA ESENKAMKNR KPYLHESRHL HALKRARGCG GRFLNAKKDV NLLPLPHSLH  180
FFRLLFKGIN NFVAVLGSAM GIESYQNQAE FLVKNRLLAD PVVPYTAIVA GILICKVIYD  240
LTQSLSGLYF KSYTGLNRIQ RIEWNNRGMS TVHALFIAAM SLYFVYWSDL YADYRTNSAV  300
TFRNSTLSTF TLGVSVGYFI ADLAMILWLY PSLGGMEYVV HHSLSGIAVA YAMFSGEGQL  360
YTFMVLISEV TTPEINMRWF LDTVGLKRSP AYLINGIVIF LAWLVARILL FVYMFFHVYL  420
HYDQVIEMHA FGYFLVFVVP SVLAAMNLMW FGKILKGLKK TLTKKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-21106179175NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021861571.11e-170transmembrane protein 56-like
TrEMBLA0A0K9RXY51e-168A0A0K9RXY5_SPIOL; Uncharacterized protein
STRINGXP_010687073.11e-161(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.12e-44nuclear factor Y, subunit A7