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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_031787 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | LBD | ||||||||
Protein Properties | Length: 240aa MW: 26063.3 Da PI: 6.5021 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 100.9 | 1.2e-31 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C+vlr++C++dC ++p++ p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +PvyG+vg+++++++ql+q ++e DCAR_031787 4 SCNGCRVLRKGCTDDCSIRPCLqwiasPESQAHATVFLAKFYGRAGLMNLINAGPDHLRPAVFRSLLYEACGRIVNPVYGSVGLLWSGKWQLCQNAVE 101 6************************************************************************************************9 PP DUF260 94 lallke 99 ++l+++ DCAR_031787 102 AVLRGD 107 988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.794 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.4E-25 | 4 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCTDDCS IRPCLQWIAS PESQAHATVF LAKFYGRAGL MNLINAGPDH 60 LRPAVFRSLL YEACGRIVNP VYGSVGLLWS GKWQLCQNAV EAVLRGDPIT QVVAIDAAEA 120 NNGPPLKAYD IRHVHKEENN NANDLHRVRN RCKFKRPGKE ANASRSHESS LSHQSEAVMN 180 GEGESRETES FVTAETADGS PGLFGAEPQG LGAGEDHKEA ESDEIELELT LGFKCGRSV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017228394.1 | 1e-179 | PREDICTED: LOB domain-containing protein 41-like | ||||
Swissprot | Q9M886 | 3e-93 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A175YBW3 | 1e-178 | A0A175YBW3_DAUCS; Uncharacterized protein | ||||
STRING | Gorai.008G056000.1 | 1e-106 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA886 | 24 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 1e-86 | LOB domain-containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_031787 |