PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_031600
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C3H
Protein Properties Length: 346aa    MW: 37884.4 Da    PI: 8.2351
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_031600genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.53.5e-111943226
                 -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                 +++ C+++ rtG C++G++C+F+H+
  DCAR_031600 19 GEPDCSYYIRTGLCRFGNSCRFNHP 43
                 6899********************9 PP
2zf-CCCH36.11.1e-115274527
                 --SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                 +C +++rtG+Ck+G++CkF+H++
  DCAR_031600 52 ECVYYLRTGQCKFGSTCKFHHPQ 74
                 69*******************97 PP
3zf-CCCH39.68.9e-13206232127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +++++C+f+++tG CkyG+ C+F+H++
  DCAR_031600 206 PGQPECQFYMKTGDCKYGAVCRFHHPR 232
                  5789*********************96 PP
4zf-CCCH39.87.3e-13253278227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  +++lC f+ar+G+Ck+G++CkF H++
  DCAR_031600 253 GEPLCIFYARYGICKFGPSCKFDHPM 278
                  689*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.6E-51744IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.3241745IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-81943IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-62245IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-42343IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.0984775IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-54974IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-65075IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-95274IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-45373IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-6205232IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596205233IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-9207232IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-6209235IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-5211233IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-7251278IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.511251279IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-10253278IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-6254278IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-4256276IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MNLTSRSAID SGFYPVREGE PDCSYYIRTG LCRFGNSCRF NHPTNRKLNE LECVYYLRTG  60
QCKFGSTCKF HHPQPSNMMV SYRGSPIYPI GAATTPGQQS YAGGIANWPL SRASFIPNSR  120
WQGPSNYAPL ILPQGVVSVQ GWNSYNGQLG SLSPAEQQET TGNSQHYATS HQSEVATGGT  180
YPSYRSGSVP VGYYALQREN VFPERPGQPE CQFYMKTGDC KYGAVCRFHH PRERLIPAPD  240
CVLSPMGLPL RTGEPLCIFY ARYGICKFGP SCKFDHPMGV FTYNMAAQSP TDAPVQHYLG  300
TSSGTGTMTL SSEGLTEASS VNPRRISLTE TRQIPSGDNH IGSEG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017227739.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF91e-165ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A175YB160.0A0A175YB16_DAUCS; Uncharacterized protein
STRINGXP_010111067.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52892439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-116zinc finger protein 1