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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
DCAR_031600 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family |
C3H |
Protein Properties |
Length: 346aa MW: 37884.4 Da PI: 8.2351 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
DCAR_031600 | genome | ARS-USDA | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 34.5 | 3.5e-11 | 19 | 43 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
+++ C+++ rtG C++G++C+F+H+
DCAR_031600 19 GEPDCSYYIRTGLCRFGNSCRFNHP 43
6899********************9 PP
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2 | zf-CCCH | 36.1 | 1.1e-11 | 52 | 74 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27
+C +++rtG+Ck+G++CkF+H++
DCAR_031600 52 ECVYYLRTGQCKFGSTCKFHHPQ 74
69*******************97 PP
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3 | zf-CCCH | 39.6 | 8.9e-13 | 206 | 232 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+++++C+f+++tG CkyG+ C+F+H++
DCAR_031600 206 PGQPECQFYMKTGDCKYGAVCRFHHPR 232
5789*********************96 PP
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4 | zf-CCCH | 39.8 | 7.3e-13 | 253 | 278 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
+++lC f+ar+G+Ck+G++CkF H++
DCAR_031600 253 GEPLCIFYARYGICKFGPSCKFDHPM 278
689*********************95 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00356 | 5.6E-5 | 17 | 44 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.324 | 17 | 45 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.8E-8 | 19 | 43 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.16E-6 | 22 | 45 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.6E-4 | 23 | 43 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.098 | 47 | 75 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.0E-5 | 49 | 74 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.23E-6 | 50 | 75 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.8E-9 | 52 | 74 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-4 | 53 | 73 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.1E-6 | 205 | 232 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.596 | 205 | 233 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.1E-9 | 207 | 232 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.32E-6 | 209 | 235 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-5 | 211 | 233 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.9E-7 | 251 | 278 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.511 | 251 | 279 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.5E-10 | 253 | 278 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.5E-6 | 254 | 278 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.8E-4 | 256 | 276 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 346 aa
Download sequence Send
to blast |
MNLTSRSAID SGFYPVREGE PDCSYYIRTG LCRFGNSCRF NHPTNRKLNE LECVYYLRTG 60 QCKFGSTCKF HHPQPSNMMV SYRGSPIYPI GAATTPGQQS YAGGIANWPL SRASFIPNSR 120 WQGPSNYAPL ILPQGVVSVQ GWNSYNGQLG SLSPAEQQET TGNSQHYATS HQSEVATGGT 180 YPSYRSGSVP VGYYALQREN VFPERPGQPE CQFYMKTGDC KYGAVCRFHH PRERLIPAPD 240 CVLSPMGLPL RTGEPLCIFY ARYGICKFGP SCKFDHPMGV FTYNMAAQSP TDAPVQHYLG 300 TSSGTGTMTL SSEGLTEASS VNPRRISLTE TRQIPSGDNH IGSEG*
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