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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_031455 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | C2H2 | ||||||||
Protein Properties | Length: 240aa MW: 26674.4 Da PI: 10.4101 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.3 | 0.00051 | 158 | 180 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C Cg++F++++ L H r H DCAR_031455 158 SCRVCGRRFRSREKLGGHFREvH 180 6**************99988877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05562 | 4.8E-45 | 14 | 144 | IPR008892 | Cold-regulated 413 protein |
PROSITE profile | PS50157 | 10.346 | 157 | 185 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 159 | 180 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009631 | Biological Process | cold acclimation | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0042631 | Biological Process | cellular response to water deprivation | ||||
GO:0070417 | Biological Process | cellular response to cold | ||||
GO:0009535 | Cellular Component | chloroplast thylakoid membrane | ||||
GO:0031357 | Cellular Component | integral component of chloroplast inner membrane | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MNIKGGFGTS VCSYSPLSSL NLQWINTITS TVLMLLSGTS IQKSFLVPIF ALQAPASIIS 60 WIKGEYGVWT AFLLLLVRLF LHIPGELELP FSALLIVLVA PYQILNLRGK LEGVILSLTI 120 AGYLAFQHFS RGGSLGKAFD QVALVEAHCE MGVGYWNSCR VCGRRFRSRE KLGGHFREVH 180 VLDERRRLRK VEFAKEGSRN RLVGKFLMEI REIRNAVRGV LIVGNCLKAT NRTEASYSI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 184 | 189 | RRRLRK |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates in response to abscisic acid (ABA), cold, freezing and drought treatments. {ECO:0000269|PubMed:12746512, ECO:0000269|PubMed:18643950}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017227488.1 | 1e-95 | PREDICTED: cold-regulated 413 inner membrane protein 1, chloroplastic-like isoform X2 | ||||
Swissprot | Q94AL8 | 4e-56 | CRIM1_ARATH; Cold-regulated 413 inner membrane protein 1, chloroplastic | ||||
TrEMBL | A0A175YBJ6 | 1e-172 | A0A175YBJ6_DAUCS; Uncharacterized protein | ||||
STRING | XP_010540531.1 | 2e-64 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12240.1 | 8e-12 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_031455 |
Publications ? help Back to Top | |||
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