PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_031122
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family M-type_MADS
Protein Properties Length: 252aa    MW: 28288.5 Da    PI: 4.2627
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_031122genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.36.1e-162162849
                 HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 ++qvtfskRr+g++ KA+EL+v ++aevav+  s  g+++ +
  DCAR_031122 21 QQQVTFSKRRKGLFNKASELCVVTNAEVAVLAQSVGGRVFAF 62
                 579*******************************99999877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.717766IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-16765IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-18882IPR002100Transcription factor, MADS-box
PfamPF003191.1E-152162IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-52843IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-54364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MEPKKTRGRQ RIEIKKLQGN QQQVTFSKRR KGLFNKASEL CVVTNAEVAV LAQSVGGRVF  60
AFGHPSVDRV VEAYLGNNVV DWGEVGEDLR SNYEEWNKKY LEIVEETKVE KAKVSIVEES  120
SRRFWWENCF EDLEVDELEI FIDSMEKLKT NLMVKGEELK INEIANADDP QSLDDQVVVP  180
NSDQFVSYNV GFANGDLMMP AVNYGSSGLN KYGFVNDGLV LDDNGGDNLQ DLSDFGTFGV  240
PNTSDLYFSQ D*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017226172.10.0PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLA0A175YJB10.0A0A175YJB1_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21342252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.18e-29AGAMOUS-like 62