PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_031013

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

Dof

Protein Properties

Length: 533aa MW: 58731.4 Da PI: 7.3548

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_031013	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.8	5.6e-39	173	232	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s +tkfCyynny++sqPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s DCAR_031013 173 PDKILPCPRCNSLDTKFCYYNNYNISQPRHFCKGCQRYWTAGGTMRNVPVGSGRRKNKSS 232 7899*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-30	161	230	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.1E-32	175	231	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.649	177	231	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	179	215	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 533 aa Download sequence Send to blast
MKAQKLIKKE RSAKRPHTKL VAKNPFTFAE YSSQELIIDS GRSGTRMSEG KDPSIKLFGK 60 TIQLLLPEED DDVSVLNHHE LDSNRSDPVV SEGDFMNTKE QEEEKVALIS EDPKTTNVDK 120 ENSAEEMKNQ TTSSGMSEDS KTPNVDKETS SLETGEKEDA SDMKNSDGTL KKPDKILPCP 180 RCNSLDTKFC YYNNYNISQP RHFCKGCQRY WTAGGTMRNV PVGSGRRKNK SSVASHYRHI 240 LVSEAVQAAR ADVTNGMHHP TGSILTFGSD SPLCESMASS LVLAEKSRNS ARNRFHGQEQ 300 TIPISYKGGE IADDHSSGSS STVSNPTEKG FSGGQESVLT NNTQRTAAQV PCFPMPPWPC 360 QWNAAQWRPQ TTQPAFGPSG NPISYYPMPP YWGSTVPYTW NMPWLSPQPS LPDQFAHISS 420 PESQTLGKHS RDGSTLRPLR PRKEDTLDKN DAERGVLVPK TLRINDPNEA AKSSIWSTLG 480 IKTEDTDLGT GAGLYKAFLP KAAEKNHIRE TSLALQANPA AMSRSLNFQE TT*

Sequence ? help Back to Top

Protein Sequence Length: 533 aa Download sequence Send to blast

MKAQKLIKKE RSAKRPHTKL VAKNPFTFAE YSSQELIIDS GRSGTRMSEG KDPSIKLFGK  60
TIQLLLPEED DDVSVLNHHE LDSNRSDPVV SEGDFMNTKE QEEEKVALIS EDPKTTNVDK  120
ENSAEEMKNQ TTSSGMSEDS KTPNVDKETS SLETGEKEDA SDMKNSDGTL KKPDKILPCP  180
RCNSLDTKFC YYNNYNISQP RHFCKGCQRY WTAGGTMRNV PVGSGRRKNK SSVASHYRHI  240
LVSEAVQAAR ADVTNGMHHP TGSILTFGSD SPLCESMASS LVLAEKSRNS ARNRFHGQEQ  300
TIPISYKGGE IADDHSSGSS STVSNPTEKG FSGGQESVLT NNTQRTAAQV PCFPMPPWPC  360
QWNAAQWRPQ TTQPAFGPSG NPISYYPMPP YWGSTVPYTW NMPWLSPQPS LPDQFAHISS  420
PESQTLGKHS RDGSTLRPLR PRKEDTLDKN DAERGVLVPK TLRINDPNEA AKSSIWSTLG  480
IKTEDTDLGT GAGLYKAFLP KAAEKNHIRE TSLALQANPA AMSRSLNFQE TT*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017223913.1	0.0	PREDICTED: cyclic dof factor 1-like
TrEMBL	A0A175YIB8	0.0	A0A175YIB8_DAUCS; Uncharacterized protein
STRING	XP_010108679.1	1e-163	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	4e-97	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	DCAR_031013