PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_030989
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 432aa    MW: 49620.3 Da    PI: 8.2626
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_030989genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.000772042123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y C++Cg + s k +L +Hi +H
  DCAR_030989 20 YYCEYCGICRSKKTLLSSHILSH 42
                 89*******************96 PP
2zf-C2H218.84.4e-066586223
                 EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                 +C+ Cg sF  + +Lk+H+++H
  DCAR_030989 65 TCEECGLSFQKPAHLKQHMQSH 86
                 6*******************99 PP
3zf-C2H2193.9e-0692116123
                  EEET..TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                  + Cp  dC+ s++rk++L+rH+  H
  DCAR_030989  92 FMCPvdDCDSSYRRKDHLNRHLLQH 116
                  79*******************9887 PP
4zf-C2H211.10.0013121146123
                  EEET..TTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                  ++C+   C+ +Fs +sn+krH +  H
  DCAR_030989 121 FECSsmGCSHRFSIQSNMKRHVKEfH 146
                  89999*****************9988 PP
5zf-C2H219.92e-06218242123
                  EEET..TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                  y+Cp   Cgk+F+  s L++H  +H
  DCAR_030989 218 YTCPepGCGKVFKYASRLRKHEDSH 242
                  99*******************9888 PP
6zf-C2H218.55.5e-06309333223
                  EET..TTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                  kC+  dC  +Fs+ksnL++H++  H
  DCAR_030989 309 KCSfeDCLHTFSNKSNLRQHMKAvH 333
                  79999****************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355162042IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.32E-1163116No hitNo description
SMARTSM003550.00716486IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.9866491IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.6E-86592IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002806686IPR007087Zinc finger, C2H2
SMARTSM003550.002192116IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.70292121IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.9E-1093118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028094116IPR007087Zinc finger, C2H2
SuperFamilySSF576677.42E-6119147No hitNo description
Gene3DG3DSA:3.30.160.601.1E-6119148IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.88121146IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.406121151IPR007087Zinc finger, C2H2
PROSITE patternPS000280123146IPR007087Zinc finger, C2H2
SMARTSM003550.022179204IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.24179209IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-7179205IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280181204IPR007087Zinc finger, C2H2
SuperFamilySSF576675.41E-5216244No hitNo description
Gene3DG3DSA:3.30.160.601.9E-7216242IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003552.2E-4218242IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.468218247IPR007087Zinc finger, C2H2
PROSITE patternPS000280220242IPR007087Zinc finger, C2H2
SMARTSM003554.1250275IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280252275IPR007087Zinc finger, C2H2
SMARTSM0035516278299IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-5289330IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.15E-7289346No hitNo description
SMARTSM003558.0E-4308333IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.655308338IPR007087Zinc finger, C2H2
PROSITE patternPS000280310333IPR007087Zinc finger, C2H2
SMARTSM0035511339365IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280341365IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MEEGGTDITK GPVFKDIRRY YCEYCGICRS KKTLLSSHIL SHHQDEVNKR KADDNAEKEE  60
LKSNTCEECG LSFQKPAHLK QHMQSHLLER PFMCPVDDCD SSYRRKDHLN RHLLQHQGKL  120
FECSSMGCSH RFSIQSNMKR HVKEFHNDSS PIEVDALCSS SYRRKDLLNR HLQDQGELFE  180
CSVTGCCQKF SSQSNMKKHV KVFHDDSSPI EVDALKEYTC PEPGCGKVFK YASRLRKHED  240
SHVKLESTEA FCSDPGCMKY FSNEQCLKAH IQSCHSKVTC EVCGSKHLKK NLKRHLLTHK  300
TKPPSDRIKC SFEDCLHTFS NKSNLRQHMK AVHFEQKAFL CSIPGCGMSF TFKHVRDNHE  360
KSGCHLYVQG DFLETDEQFR SRPRGGRKRV CPSVETFTRK RVVPPSVGSD SLPDQGPNYM  420
SWLLSSENEE I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A5e-176820219158PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D5e-176820219158PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017223703.10.0PREDICTED: transcription factor IIIA-like
TrEMBLA0A175YJJ20.0A0A175YJJ2_DAUCS; Uncharacterized protein
STRINGVIT_08s0040g00240.t011e-153(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36442447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-132transcription factor IIIA