PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_030968
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family Trihelix
Protein Properties Length: 940aa    MW: 107866 Da    PI: 8.6686
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_030968genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix85.85.3e-2735118186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  rW+++e+l+L+++r++m+e++r+++lk+plW+evs+k+ e g++rs+k+Ckek+en+ k+++++k g+++r  ++ ++++y++qle
  DCAR_030968  35 RWPREETLVLLQVRQSMDEAFRDSNLKAPLWDEVSRKLGEYGYTRSSKKCKEKFENIYKYHRRTKVGKSGR--QDGKNYRYYEQLE 118
                  8********************************************************************97..66678******97 PP
2trihelix94.41.1e-29320404186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  rW+k ev aLi++r++++ ++ ++ +k+  Weevs++m + g+ rs+k+Ckekwen+nk+y+++ke++kkr  ++s+tcpyf+ le
  DCAR_030968 320 RWPKAEVEALITVRENLDMQYHDSGSKGSVWEEVSSAMTRLGYDRSSKRCKEKWENINKYYRRVKESNKKR-RQDSKTCPYFEMLE 404
                  8*********************************************************************8.78999******997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.4682892IPR017877Myb-like domain
SMARTSM007173.0E-43294IPR001005SANT/Myb domain
PfamPF138377.5E-1734118No hitNo description
CDDcd122032.23E-213499No hitNo description
Gene3DG3DSA:1.10.10.606.4E-4312376IPR009057Homeodomain-like
PROSITE profilePS500907.747313377IPR017877Myb-like domain
SMARTSM007170.039317379IPR001005SANT/Myb domain
PfamPF138376.2E-22319406No hitNo description
CDDcd122032.76E-21319384No hitNo description
PfamPF081568.6E-11454516IPR012974NOP5, N-terminal
Gene3DG3DSA:1.20.1280.506.2E-5573610No hitNo description
PfamPF006463.0E-5574609IPR001810F-box domain
PfamPF034781.0E-13860915IPR005174Domain unknown function DUF295
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 940 aa     Download sequence    Send to blast
MLVVNSGGAA AGNESFAGSD SAGGDEGDRN SAGNRWPREE TLVLLQVRQS MDEAFRDSNL  60
KAPLWDEVSR KLGEYGYTRS SKKCKEKFEN IYKYHRRTKV GKSGRQDGKN YRYYEQLEIF  120
DNQSSYPINQ DKQTYSMDGT TSMPKPTSSS VMMAKPVNQV PHGDTHIPSF ELMDTSTSTS  180
SSSGGGHPKK KRKLMEYFNG LMKQVLERQE NLQKKFIEAI EKLEKDRISR EEEWRAQQLA  240
TKKREQGLLA HERSSSAAKD AAILSFLQKI SEQSPPLQLP INSAPLEKIL SMPQPQYSTR  300
ESSPVTKSIV HYSPGFPSSR WPKAEVEALI TVRENLDMQY HDSGSKGSVW EEVSSAMTRL  360
GYDRSSKRCK EKWENINKYY RRVKESNKKR RQDSKTCPYF EMLESLYEKR SKRQVQSCQC  420
NELASCGTLW KLVNQPTSME RLYDLKHNTS KFHAASGFSL FLCHEFESED TGKISDAVRN  480
CVSDLKEFSK VVKLVAFEPF QSPLHALNQI TAFSSGQMTD ELHKFLVLGL PKPEEGNDSE  540
LSVGLAEPKL GSRIFQVTKI PCQTDEFILE VFRDWSNLHT DILESVIKRM TCFDIIRFKH  600
VCRSWKIAVL NFWHISNPSS QPPYMIWSTT DNRGCCFLNL ARQKLYHEFN NLWGDLNIYC  660
IGCSKGWLIL HVVDEEYRSS VFIFNPFCFV ARKIVIPTDT LPDYRIIRKN YRTLLTSDPI  720
HSGGKFGVIF LMYNKVRLLM QDSYHPENNK WIEDPSMSWS FSSLEESCIR KYGYIQSTSK  780
FNSTTNCSPC FSKMTRSIPP RKIFWRPWAI NNIILYLVES GVDILLVTRI TGTLHENGQQ  840
VHATRYFDVF TYNFDDKRWV KVDSLGDRSL FLGGDHSLSL SVLDIQGCQG NSIYFTDHIS  900
SISNETGVDT GVFSLEDGSI KKLTWRRQRE SNKEQFQFS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187193PKKKRKL
2188193KKKRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A175YIN80.0A0A175YIN8_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA97942328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-103Trihelix family protein