PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_030892
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family TALE
Protein Properties Length: 322aa    MW: 36098.5 Da    PI: 6.2408
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_030892genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox253.3e-082492822255
                  SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
     Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                   +yps++++  L + +gL+++q+ +WF N+R ++
  DCAR_030892 249 WPYPSESQKLALGQATGLDQKQINNWFINQRKRH 282
                  59*****************************885 PP
2ELK27.66.5e-10201222121
          ELK   1 ELKhqLlrKYs.gyLgsLkqEF 21 
                  ELK qLlrKYs gyL +LkqEF
  DCAR_030892 201 ELKSQLLRKYSgGYLENLKQEF 222
                  9*********746********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.3E-1878122IPR005540KNOX1
PfamPF037902.2E-2080118IPR005540KNOX1
SMARTSM012561.8E-19126177IPR005541KNOX2
PfamPF037915.0E-18130175IPR005541KNOX2
SMARTSM011886.0E-4201223IPR005539ELK domain
PROSITE profilePS5007112.519222285IPR001356Homeobox domain
SuperFamilySSF466898.55E-18224301IPR009057Homeodomain-like
SMARTSM003895.6E-11224289IPR001356Homeobox domain
CDDcd000865.49E-13225285No hitNo description
Gene3DG3DSA:1.10.10.608.3E-25227288IPR009057Homeodomain-like
PfamPF059201.5E-15242281IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009934Biological Processregulation of meristem structural organization
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MDGGVGQGST SGLMDTLLEQ FSDNQYPNQV HNSSLMLLQA DHNNPSKNET VRNPSGYLMD  60
INNSSTDGGI SNSSSSSTLV KTKIMSHPHY NRLVAAYISC QKIGAPPEVV ARLEEINASL  120
VAMGGGKAPI GDDPALDQFM EAYCEMLTKY EQELCKTFTE AVLSLSRIES QFQALSSSDS  180
ASVEDNGMHN NLADPQAEDE ELKSQLLRKY SGGYLENLKQ EFTKKRKKGK LPNEARQQLL  240
QWWTRNYKWP YPSESQKLAL GQATGLDQKQ INNWFINQRK RHWRPLEDMQ FMVMNAAHPH  300
HYYMNNVAAN PIQMDISSPF L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217226LKQEFTKKRK
2223227KKRKK
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017226710.10.0PREDICTED: homeobox protein SBH1-like
SwissprotP466081e-112HSBH1_SOYBN; Homeobox protein SBH1
TrEMBLA0A175YIK20.0A0A175YIK2_DAUCS; Uncharacterized protein
STRINGXP_002518420.11e-116(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68352433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.11e-107KNOX/ELK homeobox transcription factor
Publications ? help Back to Top
  1. Shu Y, et al.
    GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean.
    Plant Cell Rep., 2015. 34(11): p. 1927-37
    [PMID:26205508]