PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

DCAR_030731

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

C2H2

Protein Properties

Length: 196aa MW: 21827.2 Da PI: 5.2872

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_030731	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.9	0.00016	38	60	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H++ H DCAR_030731 38 YECTFCKRGFTNAQALGGHMNIH 60 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	9.67E-7	36	65	No hit	No description
PROSITE profile	PS50157	11.552	38	65	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.3E-4	38	64	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0097	38	60	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	40	60	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MDCNKQGNFS ETSSDENDNV SSQRLKGNDK ATAIGRFYEC TFCKRGFTNA QALGGHMNIH 60 RKDKAKSKPK SGAIQTSNSK STAHDFDQVS NSSMYLVPIT NEHAHYQANM GGTLMNYQFY 120 LPMPVPSCPP QYAYYNLTDS IEHVASSRDL KMQEEVLETD LSLEVLKEKS ADEAVDRIEH 180 EVDLELRLGH DPGLD*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017225425.1	1e-147	PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBL	A0A175YJY3	1e-145	A0A175YJY3_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2136	21	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17810.1	1e-16	C2H2 family protein

Link Out ? help Back to Top
Phytozome	DCAR_030731