PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_030445 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | MYB | ||||||||
Protein Properties | Length: 315aa MW: 36127.2 Da PI: 4.9 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.1 | 7.4e-17 | 34 | 81 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+eEd l +++ +G g+W++ a+ g++Rt+k+c++rw++yl DCAR_030445 34 RGTWTAEEDMALMNYISHHGEGRWNSLAHSAGLKRTGKSCRLRWLNYL 81 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.9 | 1.5e-15 | 87 | 130 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++ +++++ ++G++ W++Ia++++ gRt++++k++w++ DCAR_030445 87 RGNITLEEQLVILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 130 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.025 | 29 | 85 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.32E-30 | 32 | 128 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.5E-14 | 33 | 83 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.5E-16 | 34 | 81 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-22 | 35 | 88 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.79E-10 | 36 | 81 | No hit | No description |
SMART | SM00717 | 1.4E-13 | 86 | 134 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.21 | 86 | 136 | IPR017930 | Myb domain |
Pfam | PF00249 | 5.5E-14 | 87 | 130 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-22 | 89 | 135 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.71E-10 | 91 | 130 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MDAKRERNSK EVAEMITNSC DDQEEETMIE DLRRGTWTAE EDMALMNYIS HHGEGRWNSL 60 AHSAGLKRTG KSCRLRWLNY LRPDVRRGNI TLEEQLVILE LHSRWGNRWS KIAQHLPGRT 120 DNEIKNYWRT RVQKHAKQLK CDVNSKQFRD TVRYLWMPRL VERIQAASGD STGFAKATEA 180 TGYNNSNDNI NNLSVPSQVI VMPETDKMMC DNLESMVQSE TNNPSSFTPE NFSTIASLET 240 DSYTNLSLDL INPIQNSYVS DELGFTDTLM SPVGYYNQGL GYQFIEQKTS NPWMDSGEIL 300 DNFWSTAADI WILN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-25 | 19 | 128 | 12 | 120 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017225348.1 | 0.0 | PREDICTED: transcription factor MYB108-like | ||||
TrEMBL | A0A175YGS3 | 0.0 | A0A175YGS3_DAUCS; Uncharacterized protein | ||||
STRING | POPTR_0010s15970.1 | 1e-106 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1397 | 23 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G48000.1 | 2e-84 | myb domain protein 112 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_030445 |