PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_030328 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | C3H | ||||||||
Protein Properties | Length: 713aa MW: 79308.6 Da PI: 6.1967 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.8 | 3.4e-07 | 117 | 139 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ff++ G+C Gd C+F+Hgp DCAR_030328 117 VPCIFFQK-GYCLKGDMCPFMHGP 139 79******.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 10.052 | 24 | 53 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF15663 | 4.0E-11 | 25 | 79 | No hit | No description |
SMART | SM00356 | 0.012 | 25 | 52 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.338 | 55 | 81 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0036 | 55 | 80 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.774 | 113 | 140 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.8E-6 | 114 | 139 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.15E-6 | 115 | 138 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-4 | 116 | 139 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.5E-4 | 117 | 139 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 713 aa Download sequence Send to blast |
MLGVKQNEEK EGPPHQITAE EEALKRNTDC VYFLASPLTC KKGIECEYRH SDIARLNPQD 60 CYFWLNGNCL NPKCAFRHPP LDGLLGTQVT TSLNLPPSHT MVPVSSQGLN VPGKQSVPCI 120 FFQKGYCLKG DMCPFMHGPY SLNNKATQSA GATPVPESQP NKKTFGGGLG NHTQVQKLSQ 180 GNAPKSANLP TQEKSADVLA KVPLRNRIST GRSASIATGL DNELPQYRPG NVHSFSNGNL 240 VSRSNRNHQV HIVEDQSVSN VKDADEVSRE LSPGFDVLVD DELRDSEYYP DEDQFGRSTG 300 HNGMNLNASN EYENKRSGDY GPVADVDRDL YDKRNYDSFE RLQGHSGRDV QRSSERVLGG 360 PAYTHRRRYP RADSPGQING SDLRHHLAKQ KRNTGLRSII SRDRTLLNSA DDRSFQAPRR 420 DLLPTHDTMV SSRLQGRIKL PGRSASPIPP LSENEIDRAR NRSRLSAERP LGRLRDRIKG 480 RVQEDFINDR NFRGSRIRRD IVDDNNAAFS GPKSLSELKV AKTSEIYEKH PSERMSHGKR 540 KYQKLEEGQL GEGDVSFEGP MPLSEILKRK RGGNVVSQES GSTTAEEHNQ MEIKQHLMIP 600 TEAKESNDVL FSAAKNEGSI PAAGKVVVTE GNNKLHEGQP SLQRSTSELQ IEDGMIGDEA 660 FDQKGDDFDY DEQADGKDYN LDDVENGDPE DDYFDEDDDA DDFAKKMGVV FS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017226931.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 17 | ||||
TrEMBL | A0A175YGL6 | 0.0 | A0A175YGL6_DAUCS; Uncharacterized protein | ||||
STRING | XP_008220996.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4024 | 16 | 33 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_030328 |