PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_030310

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

C2H2

Protein Properties

Length: 397aa MW: 44441.4 Da PI: 8.3783

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_030310	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.8	4.5e-06	55	77	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H DCAR_030310 55 YVCEICNQGFQRDQNLQMHRRRH 77 9*********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.29E-5	52	78	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.6E-5	54	77	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.97	55	77	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0052	55	77	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	57	77	IPR007087	Zinc finger, C2H2
SMART	SM00355	210	96	126	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MLENNPTAST GPSSSYAFAN SSENARRKRR PAGTPDPDAE VVSLSPKTLL ESDRYVCEIC 60 NQGFQRDQNL QMHRRRHKVP WKLLKRESPE VRKRVFVCPE PSCLHHDPCH ALGDLVGIKK 120 HFRRKHSNNK QVESFIEHQD ACNIRRIRPD HLQVTLQQQQ QACSSRTASS TSPSSDTNFT 180 NFAALSRSFS IPRTNISPTD HDHLRSDRDN LDQSPTDHDH VHDHQHNLEL QLLPSSSNVQ 240 TCSFYSNRND NDSTHLKLSI GTSSCSTRSN EKMKNDHLGG SEELKNALAE KALAEEARKQ 300 GKRQIELAEM EFANAKRIRQ AAQAELEKAQ ILKEQATKKI SSTLLEITCH ACKQQFQAAK 360 PRNNGATAAS HVVAEDQTSL AMSYMSSAIT EGEGHL*

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MLENNPTAST GPSSSYAFAN SSENARRKRR PAGTPDPDAE VVSLSPKTLL ESDRYVCEIC  60
NQGFQRDQNL QMHRRRHKVP WKLLKRESPE VRKRVFVCPE PSCLHHDPCH ALGDLVGIKK  120
HFRRKHSNNK QVESFIEHQD ACNIRRIRPD HLQVTLQQQQ QACSSRTASS TSPSSDTNFT  180
NFAALSRSFS IPRTNISPTD HDHLRSDRDN LDQSPTDHDH VHDHQHNLEL QLLPSSSNVQ  240
TCSFYSNRND NDSTHLKLSI GTSSCSTRSN EKMKNDHLGG SEELKNALAE KALAEEARKQ  300
GKRQIELAEM EFANAKRIRQ AAQAELEKAQ ILKEQATKKI SSTLLEITCH ACKQQFQAAK  360
PRNNGATAAS HVVAEDQTSL AMSYMSSAIT EGEGHL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269\|PubMed:16813575, ECO:0000269\|PubMed:18259878, ECO:0000269\|PubMed:24039602, ECO:0000269\|PubMed:9210330}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by auxin. {ECO:0000269\|PubMed:24039602}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017224180.1	0.0	PREDICTED: protein SHOOT GRAVITROPISM 5-like
Swissprot	F4IPE3	1e-114	IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5
TrEMBL	A0A175YHU0	0.0	A0A175YHU0_DAUCS; Uncharacterized protein
STRING	XP_009775158.1	1e-151	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1022	24	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-105	indeterminate(ID)-domain 14

Link Out ? help Back to Top
Phytozome	DCAR_030310

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kim JY,Ryu JY,Baek K,Park CM High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis. New Phytol., 2016. 209(1): p. 265-79 [PMID:26256266] Ryu JY,Kim JY,Park CM Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis. Plant Signal Behav, 2015. 10(11): p. e1093715 [PMID:26452406] Qu Y, et al. Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis. J. Exp. Bot., 2017. 68(17): p. 4851-4867 [PMID:28992128] Shi H, et al. Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17. J. Pineal Res., 2018. 65(2): p. e12494 [PMID:29607541]