PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_030155
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family CO-like
Protein Properties Length: 398aa    MW: 44771.2 Da    PI: 5.1323
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_030155genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box29.21.9e-091659340
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                 +r C+ + +k+++++C  ++ +lC+ C ++ H+       H++v
  DCAR_030155 16 ARACDGCIKKRARWYCAADDAFLCQACDSSVHSAnllagrHERV 59
                 578*****************************668888888876 PP
2CCT64.14.1e-22349391143
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                  Rea++lRY+eKr++R+F KkirYe+RK +Ae+RpR+KGrFvk+
  DCAR_030155 349 REARVLRYREKRRRRLFCKKIRYEVRKLNAEKRPRIKGRFVKR 391
                  9****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.7E-91461IPR000315B-box-type zinc finger
PROSITE profilePS5011910.2961461IPR000315B-box-type zinc finger
PfamPF006432.5E-71659IPR000315B-box-type zinc finger
CDDcd000212.81E-101761No hitNo description
PROSITE profilePS5101715.934349391IPR010402CCT domain
PfamPF062034.2E-17349391IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MISSKKLASA VGGKTARACD GCIKKRARWY CAADDAFLCQ ACDSSVHSAN LLAGRHERVR  60
LKTASTERGS VEPSWHNGFT RKPRTPRKSK LQGVQKNPIH LVPEMGQDEN SFEENDEQEQ  120
LLYQVPNLDL LSDQLCLAKQ GKKSDGTINY DKYSLRGLSE SNNDIEEFAA DVESLLGKGL  180
DEESFDMEKL GFLNCREKDL VESCDRSIET VKLEENKDTA VTMGINIGEI DITEKFELNF  240
DDYESTENCA EDNEAGANGG TCVENEEFVV RNGDELIGKK RNRLLALDYE GVISAWADQK  300
RPWVIGEGRP ELDLNDFWPA DFMEVCGGVD NQAYGEMGGS SNLMADGGRE ARVLRYREKR  360
RRRLFCKKIR YEVRKLNAEK RPRIKGRFVK RPIDNAA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1358363KRRRRL
2360375RRRLFCKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017223731.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 16-like
SwissprotQ8RWD04e-93COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A175YFY90.0A0A175YFY9_DAUCS; Uncharacterized protein
STRINGVIT_01s0011g03520.t011e-127(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15392470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.13e-84B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]