PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_030078
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family RAV
Protein Properties Length: 364aa    MW: 41037.3 Da    PI: 8.2166
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_030078genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.62.7e-1272120155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s++kGV   + +grW A+I++      ++r++lg+f  ++eAa a++ a+++++g
  DCAR_030078  72 SKFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNLENEAASAYDIAAQRFRG 120
                  79****9888.8*********3.....5*************************98 PP
2B3102.81.9e-32193293197
                  EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  f+k+ tpsdv+k++rlv+pk++ae+h    +g   +++ l +ed +g++W+++++y+++s++yvltkGW++Fvk++gLk+gD+v F+ +   +++l++
  DCAR_030078 193 FEKTVTPSDVGKLNRLVIPKQHAEKHfpiqNGAISKGILLNFEDFNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLKAGDVVSFMKSTGPDQQLFI 290
                  99*************************99955556899*************************************************55447777777 PP

                  EEE CS
           B3  95 kvf 97 
                   + 
  DCAR_030078 291 DWK 293
                  775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.84E-2472127No hitNo description
SuperFamilySSF541719.81E-1672128IPR016177DNA-binding domain
PfamPF008472.3E-772120IPR001471AP2/ERF domain
PROSITE profilePS5103219.12473128IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.1E-1973128IPR001471AP2/ERF domain
SMARTSM003808.1E-2873134IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.104.4E-40185297IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.97E-31191290IPR015300DNA-binding pseudobarrel domain
CDDcd100171.88E-28192278No hitNo description
PROSITE profilePS5086314.184193296IPR003340B3 DNA binding domain
PfamPF023623.7E-29193295IPR003340B3 DNA binding domain
SMARTSM010192.4E-22193296IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MDTSCIDDQS TTSTDSFPPP QTSPPCLIFD IEKSPEGLSR MGSGTSVILD SENNNSSNNN  60
SLEAESRKLP SSKFKGVVPQ PNGRWGAQIY EKHQRVWLGT FNLENEAASA YDIAAQRFRG  120
RDAVTNFKPL SETENDDHES RFLNSHSKAE IVDMLRKHTY NDELHQSKRN NMFVNDVISL  180
SCEKNVATRE NLFEKTVTPS DVGKLNRLVI PKQHAEKHFP IQNGAISKGI LLNFEDFNGK  240
VWRFRYSYWN SSQSYVLTKG WSRFVKEKGL KAGDVVSFMK STGPDQQLFI DWKERNGPGL  300
GHEAVGFAPV RMVRLFGINI VTAVNINNKV VIEEVDSCNK KRMREMEILG LECGKKQRII  360
DVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-5719030011122DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017223972.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1-like
SwissprotQ9ZWM91e-139RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLA0A175YFX90.0A0A175YFX9_DAUCS; Uncharacterized protein
STRINGVIT_01s0011g03070.t011e-169(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29582453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-134related to ABI3/VP1 1
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]