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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
DCAR_030078 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
|
| Family |
RAV |
| Protein Properties |
Length: 364aa MW: 41037.3 Da PI: 8.2166 |
| Description |
RAV family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| DCAR_030078 | genome | ARS-USDA | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 38.6 | 2.7e-12 | 72 | 120 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s++kGV + +grW A+I++ ++r++lg+f ++eAa a++ a+++++g
DCAR_030078 72 SKFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNLENEAASAYDIAAQRFRG 120
79****9888.8*********3.....5*************************98 PP
|
| 2 | B3 | 102.8 | 1.9e-32 | 193 | 293 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
f+k+ tpsdv+k++rlv+pk++ae+h +g +++ l +ed +g++W+++++y+++s++yvltkGW++Fvk++gLk+gD+v F+ + +++l++
DCAR_030078 193 FEKTVTPSDVGKLNRLVIPKQHAEKHfpiqNGAISKGILLNFEDFNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLKAGDVVSFMKSTGPDQQLFI 290
99*************************99955556899*************************************************55447777777 PP
EEE CS
B3 95 kvf 97
+
DCAR_030078 291 DWK 293
775 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 364 aa
Download sequence Send
to blast |
MDTSCIDDQS TTSTDSFPPP QTSPPCLIFD IEKSPEGLSR MGSGTSVILD SENNNSSNNN 60
SLEAESRKLP SSKFKGVVPQ PNGRWGAQIY EKHQRVWLGT FNLENEAASA YDIAAQRFRG 120
RDAVTNFKPL SETENDDHES RFLNSHSKAE IVDMLRKHTY NDELHQSKRN NMFVNDVISL 180
SCEKNVATRE NLFEKTVTPS DVGKLNRLVI PKQHAEKHFP IQNGAISKGI LLNFEDFNGK 240
VWRFRYSYWN SSQSYVLTKG WSRFVKEKGL KAGDVVSFMK STGPDQQLFI DWKERNGPGL 300
GHEAVGFAPV RMVRLFGINI VTAVNINNKV VIEEVDSCNK KRMREMEILG LECGKKQRII 360
DVV*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Binds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}. |
| Publications
? help Back to Top |
- Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
RAV genes: regulation of floral induction and beyond.
Ann. Bot., 2014. 114(7): p. 1459-70
[PMID:24812253] - Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
Plant Sci., 2015. 241: p. 78-95
[PMID:26706061] - Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
PLoS Genet., 2016. 12(2): p. e1005833
[PMID:26829043] - Zhao Y, et al.
ABA receptor PYL9 promotes drought resistance and leaf senescence.
Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
[PMID:26831097]
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