PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_030031
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 563aa    MW: 62427.9 Da    PI: 8.0898
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_030031genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.0014494516123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++Cp+C ++F++   L  H r+H
  DCAR_030031 494 HECPICFRMFKSGQALGGHKRSH 516
                  79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.621931IPR007087Zinc finger, C2H2
SuperFamilySSF576671.46E-7931No hitNo description
SMARTSM003550.074931IPR015880Zinc finger, C2H2-like
PfamPF139122.3E-5931IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SuperFamilySSF576671.46E-7103130No hitNo description
PROSITE profilePS501579.681108135IPR007087Zinc finger, C2H2
SMARTSM003550.25108130IPR015880Zinc finger, C2H2-like
PfamPF139124.9E-7109132IPR007087Zinc finger, C2H2
PROSITE patternPS000280110130IPR007087Zinc finger, C2H2
SuperFamilySSF576673.39E-6414436No hitNo description
SMARTSM003554.8414436IPR015880Zinc finger, C2H2-like
PfamPF139128.5E-7414438IPR007087Zinc finger, C2H2
PROSITE profilePS501579.743414441IPR007087Zinc finger, C2H2
PROSITE patternPS000280416436IPR007087Zinc finger, C2H2
SuperFamilySSF576673.39E-6489516No hitNo description
SMARTSM003550.3494516IPR015880Zinc finger, C2H2-like
PfamPF139121.1E-8494516IPR007087Zinc finger, C2H2
PROSITE profilePS501578.891494516IPR007087Zinc finger, C2H2
PROSITE patternPS000280496516IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MEKDQELRFV CKWCDKKYPC GKSLGGHMRS HVIAAANSAE SDEKLSALMA ETGLIKCEAP  60
SVAAVAGAGG GGINGDFGGP SGGYGLRENP KKTWRAVGST FPIQQQERIC KQCGKGFQSL  120
KALCGHMACH SEKERVLKDD HSWTSEDPKL VMDGHSDTEE AEDLRRQTRS KSKRYKRIVV  180
KSSHFNLVNN NSINYGSSSV SEVYEQEQEE VAICLMMLSR DSGNWGGVNS VVESSDNNSV  240
ILETKSSSID MKLGRKGGLS LGHEALEMKK LGGARKLKLS ALDAESVQLE NSHSGYFKNG  300
VKMVDSDISV DELFRYGEYR KSLKGHEGVE ISNADMDMGF NRGKNYETGL SKSFGKEKGF  360
SEFGSSSKSL KYDLKRTRDA PESPELRKES LRRLIYEDSS DGELSKNVYK RSKYECLNCN  420
KTFNSHQALG GHRPCHKKPT AKFGSRYASG ENNLDDDDNP PDMTPTRKYE SVSNKKQYAS  480
NAAKKIRTKK NKGHECPICF RMFKSGQALG GHKRSHFING AEDFSNQVPL FKQDAAEIHD  540
MIDLNLPAPE EDEADENEKF IY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017225581.10.0PREDICTED: uncharacterized protein LOC108201802
TrEMBLA0A175YI080.0A0A175YI08_DAUCS; Uncharacterized protein
STRINGSolyc04g005440.1.11e-152(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13432255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.18e-40C2H2-like zinc finger protein