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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
DCAR_029604 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family |
C3H |
Protein Properties |
Length: 271aa MW: 28357.3 Da PI: 8.6998 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
DCAR_029604 | genome | ARS-USDA | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 19.2 | 2.2e-06 | 85 | 97 | 15 | 27 |
-TTTTT-SS-SSS CS
zf-CCCH 15 CkyGdrCkFaHgp 27
Ck+Gd+C+FaH++
DCAR_029604 85 CKFGDKCRFAHSE 97
***********95 PP
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2 | zf-CCCH | 32.1 | 1.9e-10 | 237 | 261 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+kt+ C +f + G C +GdrC+FaHg
DCAR_029604 237 FKTKVCENFTK-GSCTFGDRCHFAHG 261
69*********.*************8 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50103 | 7.329 | 12 | 39 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 2.1 | 24 | 36 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-11 | 69 | 101 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-7 | 70 | 100 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.17 | 70 | 97 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.267 | 70 | 98 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.045 | 85 | 95 | No hit | No description |
SuperFamily | SSF54791 | 4.68E-14 | 136 | 212 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 4.9E-11 | 141 | 211 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 13.586 | 142 | 206 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 1.9E-14 | 142 | 210 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 3.15E-13 | 144 | 206 | No hit | No description |
Pfam | PF00013 | 3.7E-10 | 144 | 208 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:4.10.1000.10 | 7.6E-17 | 231 | 267 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.66E-9 | 235 | 267 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-7 | 236 | 262 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.586 | 236 | 263 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.0E-8 | 237 | 261 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 271 aa
Download sequence Send
to blast |
MPVPQYARSC SEYPSGLVPG NFTSGCQFGE GCHFLHYVPG GFSALGQMGN MGPGARKPAP 60 PTYADGPAPA IKTKLCNQIN TPEGCKFGDK CRFAHSEMEL GRPGLSAYED PRAMRAPMGG 120 AYGGRVDPSP PGLAAAANFG ASATAKISID ASLAGAVIGK GGVNSKQICR MTGVKFAIRD 180 HDTDPNQKNV ELEGNFDQIK DASGMVRELI MRIGASARGP VRTPMAMPGQ APPASNFKTK 240 VCENFTKGSC TFGDRCHFAH GAEELRKTAI *
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