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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_029601 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | Dof | ||||||||
Protein Properties | Length: 174aa MW: 19790.2 Da PI: 9.9906 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 90.4 | 1.5e-28 | 7 | 65 | 2 | 60 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 + ++lkcprCds++tkfCy+nn sqPry Ck+C+r+Wt+GG lr++P ++ r+ ++ DCAR_029601 7 PPQNLKCPRCDSEETKFCYFNNSKSSQPRYRCKNCNRFWTHGGKLRDIPSNAAERRAER 65 67899**********************************************99998776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 9.0E-15 | 4 | 55 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 7.3E-27 | 9 | 65 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 24.046 | 11 | 65 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 13 | 49 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MEEMMKPPQN LKCPRCDSEE TKFCYFNNSK SSQPRYRCKN CNRFWTHGGK LRDIPSNAAE 60 RRAERARDSF ISTISSPPTV TYAAAEIDRA RPLYLTRPRP NQPRLEFVRT DINSLSITKS 120 HAAPKYVQVQ KYHVQPNLSV FQASYGQGVP DRHYMGGSTS DPSRSSSGAW FSY* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017225011.1 | 1e-129 | PREDICTED: dof zinc finger protein DOF4.4-like | ||||
TrEMBL | A0A175YFM8 | 1e-127 | A0A175YFM8_DAUCS; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21050.1 | 5e-21 | Dof-type zinc finger domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_029601 |