PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

DCAR_029581

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

C2H2

Protein Properties

Length: 434aa MW: 48940.8 Da PI: 9.8508

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_029581	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00025	374	393	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cgk+F ++ +L++H++++ DCAR_029581 374 CSQCGKTF-DPNQLHKHMSSC 393 ******.*******998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06136	4.3E-42	16	300	IPR010369	Protein of unknown function DUF966

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence Send to blast
MEATAQQGVG EVRRLHIVYF ISRKGRIEHP HLIRVHHLSR GGVRLRDIKR WLSELRGKDM 60 PESYAWSYKR RYKTGFVWQD LLDEDLITPI ADNEYVLKGS EIPSVDSDLE LGQFCDGKEG 120 VKQKEQPKSE AKFNDSKSSS QAKSREQESP TSMLTKPLLE IEEQSSTFSS DSSMSLTDDS 180 PKFEHKIHST LRKEREDHIF PDEEAIQEVE REALGEKAPF IPNLANENKK IPTKNFGKSK 240 KADPTPDQSS SSKSKFTRSR SYSNNASNIF RNLLTCGTVD TKDSSMMVIK RKSTSSKPSK 300 LDLSTYKGNQ NMAQICRGDV VGGSERISRN FWHETQENDH RKSCDGASHS RQKKEMNSQR 360 PVPPAYRPRN GPNCSQCGKT FDPNQLHKHM SSCRGMKALA KAAAATTAAN TSSYSHRRST 420 DSPRPSIFKP LLD*

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence Send to blast

MEATAQQGVG EVRRLHIVYF ISRKGRIEHP HLIRVHHLSR GGVRLRDIKR WLSELRGKDM  60
PESYAWSYKR RYKTGFVWQD LLDEDLITPI ADNEYVLKGS EIPSVDSDLE LGQFCDGKEG  120
VKQKEQPKSE AKFNDSKSSS QAKSREQESP TSMLTKPLLE IEEQSSTFSS DSSMSLTDDS  180
PKFEHKIHST LRKEREDHIF PDEEAIQEVE REALGEKAPF IPNLANENKK IPTKNFGKSK  240
KADPTPDQSS SSKSKFTRSR SYSNNASNIF RNLLTCGTVD TKDSSMMVIK RKSTSSKPSK  300
LDLSTYKGNQ NMAQICRGDV VGGSERISRN FWHETQENDH RKSCDGASHS RQKKEMNSQR  360
PVPPAYRPRN GPNCSQCGKT FDPNQLHKHM SSCRGMKALA KAAAATTAAN TSSYSHRRST  420
DSPRPSIFKP LLD*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017224667.1	0.0	PREDICTED: uncharacterized protein LOC108200907 isoform X2
TrEMBL	A0A175YFK7	0.0	A0A175YFK7_DAUCS; Uncharacterized protein
STRING	PGSC0003DMT400079895	1e-118	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5206	13	15

Link Out ? help Back to Top
Phytozome	DCAR_029581