PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_029574

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

C2H2

Protein Properties

Length: 700aa MW: 77103.3 Da PI: 5.1593

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_029574	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.5	0.00043	63	84	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C+ F + n++rHir+H DCAR_029574 63 KCDKCSLEFCSTVNYRRHIRVH 84 7*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.162	62	89	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	64	84	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 700 aa Download sequence Send to blast
MIVGVGNDVQ DALVRQTIGI GPYLSFPRVN DVPMQWVQLL NGFDQQELYG WPMLTPLKIQ 60 MQKCDKCSLE FCSTVNYRRH IRVHRRLKVD KDSYKSRDSL GAFWDKVSLD EAKNILSFKD 120 VTLEGLPGSS IIKALASFIR APGFCTLPQV YVKAGLVLLD AIEATPSRLP ISSQELFTVL 180 DDASERTFLS GSTEGSVQKF IFDGEARKVG LEIKNLVACT SFLIEQSLVK AWIADKDAEA 240 LRCQKLLVEE EEAAQRRQAE LLERKRLRKL RQKEQKTKGR SCKETTVLTS AADILETVPS 300 AESSTPPQSE ADLHAVSSPP QSEVDLHSSS SPPQSEGDLH TSSSLPHSEG DLHELEDHSS 360 VIEPVHIFNN EVNGHINIEG GYNSELVDIG RAKNVELPES QDSNNQQIVD SKLQVLESKS 420 EQNACHPSHS LDVVKPDPIQ AQAPPNDLMV APVNGSDIST GKGTVENGRE CVSALLHERE 480 ISQTDHTSCE VMIGSITVTL RNCTTQKQHD DSQSESLHEN CSIDHVTCEN VGAHYKQIKP 540 ESTMNNTLIS NDRHEVESEF VVQTGVTGVG TMPDKCSHAS SEVDSDSKQN DFIQPAKVAL 600 SSHSARAFLA HRWKEAISED HETLVLSQEA ESQGHCDAIN ECSEAVSTVK AIDSEELSVL 660 GRAKNFLDIV GAPEYPTSRP VDSKRTSKPR KGYQMKVQR*

Sequence ? help Back to Top

Protein Sequence Length: 700 aa Download sequence Send to blast

MIVGVGNDVQ DALVRQTIGI GPYLSFPRVN DVPMQWVQLL NGFDQQELYG WPMLTPLKIQ  60
MQKCDKCSLE FCSTVNYRRH IRVHRRLKVD KDSYKSRDSL GAFWDKVSLD EAKNILSFKD  120
VTLEGLPGSS IIKALASFIR APGFCTLPQV YVKAGLVLLD AIEATPSRLP ISSQELFTVL  180
DDASERTFLS GSTEGSVQKF IFDGEARKVG LEIKNLVACT SFLIEQSLVK AWIADKDAEA  240
LRCQKLLVEE EEAAQRRQAE LLERKRLRKL RQKEQKTKGR SCKETTVLTS AADILETVPS  300
AESSTPPQSE ADLHAVSSPP QSEVDLHSSS SPPQSEGDLH TSSSLPHSEG DLHELEDHSS  360
VIEPVHIFNN EVNGHINIEG GYNSELVDIG RAKNVELPES QDSNNQQIVD SKLQVLESKS  420
EQNACHPSHS LDVVKPDPIQ AQAPPNDLMV APVNGSDIST GKGTVENGRE CVSALLHERE  480
ISQTDHTSCE VMIGSITVTL RNCTTQKQHD DSQSESLHEN CSIDHVTCEN VGAHYKQIKP  540
ESTMNNTLIS NDRHEVESEF VVQTGVTGVG TMPDKCSHAS SEVDSDSKQN DFIQPAKVAL  600
SSHSARAFLA HRWKEAISED HETLVLSQEA ESQGHCDAIN ECSEAVSTVK AIDSEELSVL  660
GRAKNFLDIV GAPEYPTSRP VDSKRTSKPR KGYQMKVQR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	262	269	ERKRLRKL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017223908.1	0.0	PREDICTED: uncharacterized protein LOC108200310
TrEMBL	A0A175YFK3	0.0	A0A175YFK3_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3722	21	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	5e-98	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	DCAR_029574