PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_029561
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 472aa    MW: 52995.9 Da    PI: 4.8043
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_029561genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.3e-11268315355
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  ++h + E++RR ++N +++ L+ l+P +     +K++ a+++  A++YIk+Lq
  DCAR_029561 268 VKHFATEKQRRVHLNGKYAVLKNLVPIS-----TKPDRASVVGDAIDYIKELQ 315
                  68*************************9.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.776265314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-15266336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.98E-11268318No hitNo description
PfamPF000103.2E-9268315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-11269323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-10271320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MIVNPELYEE GSACIDPSHM QYQALQEDGY SQTMVQNCNS TNFSMDDQQQ MLSYPQQDAA  60
AAAAAAAANM ELEINQQMGL DLENCYNPNN NGEPHLMQDQ NHQPSWETHQ VLNFNHYQQI  120
QEMQHNSNNN CSLENTANQY PQTPDLLNLF HLPNCSSSVL PNSSITFTNP THKSGFFGDL  180
PNTQDTTVGS SSVLYDPMFH LNLPPPPPIF RDLFQSNFPH GYNFSGTRNG ALFDGMEDTE  240
GNGEFDAGVL EFSRDLNCLG KGKGGKDVKH FATEKQRRVH LNGKYAVLKN LVPISTKPDR  300
ASVVGDAIDY IKELQRTVNE LQILVEKKRY SRERLRRHMT EDESVLEVES KNMMKPQGDS  360
DQAYNGNALR SSWLQRKSKN TEVDVRIIDD EVTIKLVQQK RINSLLFVSK VLDELQLDLQ  420
HVAGGLIGDF YSFLFNTKIC EGSSVYASAI ANKLIDVVDR EYAASQPTSS Y*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017225881.10.0PREDICTED: transcription factor bHLH91-like
TrEMBLA0A175YFI90.0A0A175YFI9_DAUCS; Uncharacterized protein
STRINGVIT_15s0107g00380.t011e-156(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26962351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.17e-88bHLH family protein