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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_029516 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | Dof | ||||||||
Protein Properties | Length: 263aa MW: 28381.9 Da PI: 7.5029 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 70.4 | 2.7e-22 | 8 | 66 | 2 | 60 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 e++l+cprCds++tkf y+nn +sqPry C +C++ Wt+GG +r++ g r+ ++ DCAR_029516 8 MEQNLRCPRCDSEETKFAYFNNNKTSQPRYRCNNCKKLWTNGGKVRDLSSNGEERRVNR 66 57899******************************************998777766544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-12 | 9 | 66 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.8E-23 | 10 | 65 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 20.738 | 12 | 66 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MVNPSSEMEQ NLRCPRCDSE ETKFAYFNNN KTSQPRYRCN NCKKLWTNGG KVRDLSSNGE 60 ERRVNRSRDS SPPIVSSAPP PPPLPSSMTS AGGIINETGR LNLTRPPPNH NQPPFKFVRM 120 DIQNLSIKPL EPPHDVAQTN IVQQNQQSFL NTTHSSNYIE PNINTFGNNP IGGSTGGPSG 180 SWGWSSTPVH LYIEPTNAHT FGENNNGMGG PNSDPSGLSS SPWSSSPPSY YIEPNNAGNN 240 NNPVDGSARD PSGSSSGAWS SN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017224986.1 | 0.0 | PREDICTED: dof zinc finger protein DOF4.7-like | ||||
TrEMBL | A0A175YEJ0 | 0.0 | A0A175YEJ0_DAUCS; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G45610.1 | 5e-18 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_029516 |