PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_029462 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ERF | ||||||||
Protein Properties | Length: 219aa MW: 24352.8 Da PI: 4.562 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.2 | 2e-18 | 90 | 140 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g++++eIr p ++g +r++lg+++t+e+Aa a+++a+ k++g DCAR_029462 90 RYRGVRRRP-WGKFASEIRNPAKRG--ARIWLGTYDTPEDAALAYDKAAFKIRG 140 8********.**********97765..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.83E-31 | 89 | 150 | No hit | No description |
SMART | SM00380 | 4.5E-37 | 90 | 154 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.7E-13 | 90 | 140 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.4E-22 | 90 | 149 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.131 | 90 | 148 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.3E-31 | 90 | 149 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-10 | 91 | 102 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-10 | 114 | 130 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MCSQILSDSD FAVLESIRQH LLEDAVDFGS RNLSDNSVYE RNFSFGSTDS GAESGGSEDY 60 TSEWIDMLRT EETKQEVEAA SAKKQPEWKR YRGVRRRPWG KFASEIRNPA KRGARIWLGT 120 YDTPEDAALA YDKAAFKIRG SRAKVNFPNL LRPNLSEKSN ANCNKSTSQS ESSLSLSPSS 180 SSENGSVKNT STCIDSPVED IEDFFLLTDE DLFLMDSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-29 | 89 | 148 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017225889.1 | 1e-160 | PREDICTED: ethylene-responsive transcription factor 2-like | ||||
TrEMBL | A0A175YDY9 | 1e-158 | A0A175YDY9_DAUCS; Uncharacterized protein | ||||
STRING | Solyc01g090300.2.1 | 1e-43 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 2e-34 | ethylene-responsive element binding factor 13 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_029462 |