PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_029297
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 741aa    MW: 80060.6 Da    PI: 6.5712
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_029297genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.63.4e-16453499455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  DCAR_029297 453 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 499
                  6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.65E-17445503No hitNo description
SuperFamilySSF474591.16E-20446512IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-20446507IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.349449498IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-13453499IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-17455504IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 741 aa     Download sequence    Send to blast
MPLSEFYGTS KGKVEGSRST DLAFVPNTGL VELVCENGQI VMQDQSINRK APKMPTNNFH  60
FQTPRFLDKD VEIETGSKVG KYGTIDSIYS DITTSAPLTE PVLTQDDDMA QWFNYPIEDP  120
LQQDYCSDFL PELSGVTVNE PSMRNSFAST EKRDRYNQVV RNSHTVSVQN NEMAPGQGSA  180
SKPPPSKYAP SYHWSMPQGQ ASVSSVGSRV SDIQHEASGN LVSSQTPTGH LPNMKMQKQE  240
SGLPRSNSSL LNFSHFSRPA AIARANIQNA SSIPPVASSA ADRMVVNDTL PLGSGRNPAE  300
STQLDQNCLS RKEMNYHTQP NFVSTKVDST RAEPIQVEES LPLGRSDAVC REDANNNNKD  360
KSSNPYIGGT RAKGVLENEK AGEPVGASSS VCSGNSVEKT SNDRRTNAKR KKCRDAEESE  420
GQSEDVEEES AGVKKAAPVR GGSGSKRSRA AEVHNLSERR RRDRINEKMR ALQELIPNCN  480
KVDKASMLDE AIEYLKTLQL QVQIMSMGAG MYMPPMMLPT GMQQFHAAHL PHFSPMGVGM  540
GMGMGMGFGM NMLDMNGGPR GCSMIPMSTM QGAHFPSPHM SAAASFQGVA GGNLPVFGQP  600
SQGFPMSAAG AQLAPMSGQI PIKSASGMIG LKMGVNVEVS KSVPAPTMDS KNLMKTGNLQ  660
EMQNADARIS LNTQSSQFHT PNEEFDQSAL VRKTDQGPDG GRTDVGGSTD DNSTRKNDTL  720
PSRDAMNLHL YLQVVIDSNN *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1457462ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017226281.10.0PREDICTED: transcription factor PIF3
RefseqXP_017226282.10.0PREDICTED: transcription factor PIF3
TrEMBLA0A175YDH30.0A0A175YDH3_DAUCS; Uncharacterized protein
STRINGVIT_14s0060g00260.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49652437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-44phytochrome interacting factor 3