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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
DCAR_029217 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family |
C3H |
Protein Properties |
Length: 313aa MW: 33827 Da PI: 8.4602 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
DCAR_029217 | genome | ARS-USDA | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 38.5 | 1.9e-12 | 124 | 150 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
yk+e Cr++ +G C+yG++C+FaHg+
DCAR_029217 124 YKMEMCRTWEDFGSCRYGAKCQFAHGK 150
9************************96 PP
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2 | zf-CCCH | 22.3 | 2.4e-07 | 169 | 187 | 6 | 25 |
-SGGGGTS--TTTTT-SS-S CS
zf-CCCH 6 CrffartGtCkyGdrCkFaH 25
C+ + G C+yG++C+F+H
DCAR_029217 169 CKSYTS-GSCSYGSKCRFIH 187
777766.************* PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
Gene3D | G3DSA:4.10.1000.10 | 8.2E-17 | 122 | 155 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.5E-6 | 123 | 150 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.23E-9 | 123 | 155 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.159 | 123 | 151 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-8 | 124 | 150 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.16E-5 | 162 | 190 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.2E-4 | 163 | 189 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.033 | 163 | 190 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.6E-8 | 166 | 189 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-5 | 168 | 187 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 313 aa
Download sequence Send
to blast |
MERIYIDNNY NLRKVMALSG VVSLINNSPV TLYNHSLRNS GFDSRADCGV LSSLENLDSP 60 IVRYYRSGSP SSKSPIVFTT PVKVEEDVVV MDGVLVGPVS GGRHRSLSMS DSGGSSSSAG 120 KGFYKMEMCR TWEDFGSCRY GAKCQFAHGK EELRPIRFSN KSKLEAQICK SYTSGSCSYG 180 SKCRFIHQQN NSPESAKDSP FTVISSTPQT VSQSDSSASA TDSPVSVISS KTRTVSPIKL 240 ENAMNTSESS SFTFAKTDWS PLDDGIDVVL PCSSSTDKAP RGEIDAYINS VLYGPSKRMK 300 LPVFAAICPS PR*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1rgo_A | 7e-16 | 124 | 190 | 4 | 69 | Butyrate response factor 2 |