PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_029217
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C3H
Protein Properties Length: 313aa    MW: 33827 Da    PI: 8.4602
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_029217genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.51.9e-12124150127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  yk+e Cr++  +G C+yG++C+FaHg+
  DCAR_029217 124 YKMEMCRTWEDFGSCRYGAKCQFAHGK 150
                  9************************96 PP
2zf-CCCH22.32.4e-07169187625
                  -SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                  C+ +   G C+yG++C+F+H
  DCAR_029217 169 CKSYTS-GSCSYGSKCRFIH 187
                  777766.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.108.2E-17122155IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-6123150IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.23E-9123155IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.159123151IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-8124150IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.16E-5162190IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-4163189IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.033163190IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-8166189IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-5168187IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MERIYIDNNY NLRKVMALSG VVSLINNSPV TLYNHSLRNS GFDSRADCGV LSSLENLDSP  60
IVRYYRSGSP SSKSPIVFTT PVKVEEDVVV MDGVLVGPVS GGRHRSLSMS DSGGSSSSAG  120
KGFYKMEMCR TWEDFGSCRY GAKCQFAHGK EELRPIRFSN KSKLEAQICK SYTSGSCSYG  180
SKCRFIHQQN NSPESAKDSP FTVISSTPQT VSQSDSSASA TDSPVSVISS KTRTVSPIKL  240
ENAMNTSESS SFTFAKTDWS PLDDGIDVVL PCSSSTDKAP RGEIDAYINS VLYGPSKRMK  300
LPVFAAICPS PR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A7e-16124190469Butyrate response factor 2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017226043.10.0PREDICTED: zinc finger protein 36, C3H1 type-like 2
TrEMBLA0A175YDA10.0A0A175YDA1_DAUCS; Uncharacterized protein
STRINGXP_010261083.11e-64(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77651824
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.28e-13C3H family protein