PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_029119
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 284aa    MW: 30362.9 Da    PI: 8.1585
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_029119genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.0001125147123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ykC+ C+k+Fs+   L  H  +H
  DCAR_029119 125 YKCSVCDKVFSSYQALGGHKASH 147
                  9***********99999998887 PP
2zf-C2H214.40.00011177199123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++C+k F++   L  H r+H
  DCAR_029119 177 HVCNICHKAFPTGQALGGHKRRH 199
                  79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.19E-10124199No hitNo description
Gene3DG3DSA:3.30.160.605.9E-5124147IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0035125147IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.951125147IPR007087Zinc finger, C2H2
PfamPF139124.2E-14125149IPR007087Zinc finger, C2H2
PROSITE patternPS000280127147IPR007087Zinc finger, C2H2
PfamPF139125.8E-12176201IPR007087Zinc finger, C2H2
PROSITE profilePS501579.141177199IPR007087Zinc finger, C2H2
SMARTSM003550.076177199IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280179199IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MAIEALSSPT TPTPPPSFHY KTLPKNQNPS KTIDTTNDDN HSSDPCMKKK RTKRPRYETP  60
STEEEYLALC LIMLARGTTD TASINKTADT KPVEVKPNQT YPVYPADSGT NHQSQNSSTD  120
HYVPYKCSVC DKVFSSYQAL GGHKASHRKL AGAADDVSIM NSGIPLSSVL TPSGRAHVCN  180
ICHKAFPTGQ ALGGHKRRHY DGVIGSAAGS GVTSSSGTGS IHLQGHHKEM DFDLNLPAEP  240
EVGVPMEISV DFGRKSQLSG EQEAESPHPG KKARFSSGLG LGY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14653MKKKRTKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017224541.10.0PREDICTED: zinc finger protein ZAT10-like
TrEMBLA0A175YD180.0A0A175YD18_DAUCS; Uncharacterized protein
STRINGXP_009772006.12e-64(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7352495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.13e-38C2H2 family protein