PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_028858
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family Trihelix
Protein Properties Length: 282aa    MW: 33292.6 Da    PI: 8.4573
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_028858genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix80.13.1e-2532114186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  +W+ qe+++ + +r e++ ++ ++k++k lWe ++ km+e+g++rs++qCk+kw+nl +ryk ++++e ++    ++++py+++l+
  DCAR_028858  32 QWSMQETRDFLMIRAELDPTFMETKRNKLLWELIATKMKEKGYNRSAEQCKCKWKNLVTRYKGCETIEPEG---MKQQFPYYNELQ 114
                  7********************************************************************97...45579*****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0072991IPR001005SANT/Myb domain
CDDcd122033.90E-253196No hitNo description
PfamPF138377.6E-2132116No hitNo description
PROSITE profilePS500907.4223389IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MDAGHHHHLL HHQLQQQQVS VNIDTGGDRF PQWSMQETRD FLMIRAELDP TFMETKRNKL  60
LWELIATKMK EKGYNRSAEQ CKCKWKNLVT RYKGCETIEP EGMKQQFPYY NELQAIFAAR  120
MQRMLWNEAE GSGAGGSKKK ATQLSSDDED ENEESDGEQR GTTSGKKKRK VKQNPGSSNA  180
IGGNVNANVG GLKEMLEDFM RQQGEMEMRW LKTYEAREEE RRMREMEWRQ RMEELEKERI  240
MMERRWRERE EQRSAREEAR AEKRDALINA LLIKLRREDK S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ebi_A6e-1329112386DNA binding protein GT-1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165170KKKRKV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}.
UniProtProbable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00481DAPTransfer from AT5G01380Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017220687.10.0PREDICTED: trihelix transcription factor GT-3b-like
SwissprotO804505e-69TGT3B_ARATH; Trihelix transcription factor GT-3b
SwissprotQ9SDW06e-69TGT3A_ARATH; Trihelix transcription factor GT-3a
TrEMBLA0A175YKF10.0A0A175YKF1_DAUCS; Uncharacterized protein
STRINGXP_010264622.11e-110(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41872343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.17e-51Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]