![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | DCAR_028631 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 373aa MW: 42001.9 Da PI: 6.9559 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.6 | 1.9e-07 | 135 | 155 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G Ck Gd C FaHg DCAR_028631 135 ACPDFRK-GNCKKGDVCEFAHG 155 7******.*************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 6.099 | 82 | 119 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6E-5 | 130 | 156 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.615 | 131 | 157 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.5E-5 | 135 | 157 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.4E-5 | 135 | 155 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.5E-4 | 162 | 192 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.2 | 165 | 188 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.427 | 165 | 189 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 373 aa Download sequence Send to blast |
MMIGERSRHS NPTVHVPPWS FDNPTAEISL SHSPNTNPNY LENDYSFFLK NNSLANIRRY 60 IQSNLGEIDE NDVSDDENDD VSVDTYACDN FRMYEFKVRK CVRGRSHDWT ECPYAHPGEK 120 ARRRDPRKFH YSGTACPDFR KGNCKKGDVC EFAHGVFECW LHPARYRTQV CKDGQACRRR 180 VCFFAHTPEE VRVLSPRASC QTRSPGDSYD GSPRRLCFEA ECSPNESPPL SPMAVSSLSR 240 SLGSSSIGEM VASLRQLQLN KVKSIPTSWA LQMGGGSPGS GLSRVGFSSL PNTPTRSVTR 300 PRSGYSDFWE KMKLDEEVEE EPVMERVESG KTLRAKMFEK LSKENPLDRV DPNPSDAPNP 360 DLDLGWVSDL VK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017220005.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 20 | ||||
Swissprot | Q9M0G2 | 1e-118 | C3H49_ARATH; Zinc finger CCCH domain-containing protein 49 | ||||
TrEMBL | A0A175YKQ7 | 0.0 | A0A175YKQ7_DAUCS; Uncharacterized protein | ||||
STRING | XP_009608132.1 | 1e-150 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1857 | 21 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G19810.1 | 1e-103 | C3H family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | DCAR_028631 |
Publications ? help Back to Top | |||
---|---|---|---|
|