PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

DCAR_028060

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

Dof

Protein Properties

Length: 267aa MW: 29120.6 Da PI: 9.3406

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_028060	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.4	3.2e-38	15	75	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lr vPvGgg+rknk+++ DCAR_028060 15 QQPPLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRKVPVGGGCRKNKRVK 75 56789*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	3.6E-33	18	73	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.115	19	73	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-26	19	73	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	21	57	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MERLTQEQII QQQQQQPPLK CPRCDSSNTK FCYYNNYSLS QPRHFCKACK RYWTRGGTLR 60 KVPVGGGCRK NKRVKKTMMT PATESSNSPS LSAPVTTAGT NTNPSLARID RVSPLVYGVH 120 SNNASSSDLN LSFQRFNSVT DSAPVYDYNL QQNLLGFSSA GLMANHISSS KSFLSNYVPS 180 PLYASSTSST VSPSLITTSC FNPEPEKSIG AQNNFFGIIP NYPDMQMQAN NNKYGIEGST 240 DPNSLFSVGA SWFDPANFGS SVPSLI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017220662.1	0.0	PREDICTED: dof zinc finger protein DOF1.4-like
TrEMBL	A0A175YN35	0.0	A0A175YN35_DAUCS; Uncharacterized protein
STRING	XP_006467767.1	1e-50	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	5e-35	Dof family protein

Link Out ? help Back to Top
Phytozome	DCAR_028060