PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_027772
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 404aa    MW: 44898.6 Da    PI: 6.8765
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_027772genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.0015176198123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C+ C+k+F+++  L  H  +H
  DCAR_027772 176 FQCKACKKVFNSHQALGGHRASH 198
                  89**************9999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139128.3E-51739IPR007087Zinc finger, C2H2
SMARTSM003550.821739IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.3E-71739No hitNo description
PROSITE profilePS501579.1821739IPR007087Zinc finger, C2H2
PROSITE patternPS0002801939IPR007087Zinc finger, C2H2
SuperFamilySSF576673.3E-7171198No hitNo description
PROSITE profilePS5015710.014176203IPR007087Zinc finger, C2H2
PfamPF139124.9E-9176200IPR007087Zinc finger, C2H2
SMARTSM003550.073176198IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280178198IPR007087Zinc finger, C2H2
SuperFamilySSF576671.46E-5256283No hitNo description
PfamPF139123.9E-12259282IPR007087Zinc finger, C2H2
SMARTSM003550.47259281IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.598259281IPR007087Zinc finger, C2H2
PROSITE patternPS000280261281IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MVVEESNHKE STSSILHYCK ICNRGFSCGG ALGGHMRAHN IAEVIDRIHG EQQPATSKAD  60
FGHESQGDKH SYFLRRTSNR FVSFRSSPRG DYYGKSSFDD EKLSIFSSLE GEGGGANRGY  120
ILEYLRAKEF QSFDEFRISR EEEDLANFLV TLSNNSNSCN EDDYYNKSKE VAKGLFQCKA  180
CKKVFNSHQA LGGHRASHKK VKGCYAARFD HLTSADTDIA NEDSSSHDEF STPLELNITT  240
NNSNNHVMSH ANSGKSKMHE CSICHRTFSS GQALGGHKRC HWLQSDGAYM PSFHDHFQNY  300
SAQSFQNVGV MGSTMLDLNL PPTLESSKRN SAKININIED NDEKQICQTT NLETAMSLSL  360
HDYSLGEKGR EKKVAKLSNV NKEMELDPVS SPWLQVGLAS TTG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017221580.10.0PREDICTED: zinc finger protein ZAT1-like
TrEMBLA0A175YM620.0A0A175YM62_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19102243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.16e-26C2H2-like zinc finger protein