PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_027670
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 338aa    MW: 37674.8 Da    PI: 7.5223
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_027670genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.60.0018213234122
                  EEETTTTEEESSHHHHHHHHHH CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirt 22 
                  ++C+ C+k Fs+   L  H   
  DCAR_027670 213 FECKTCNKQFSTFQALGGHRTA 234
                  89*********99888777655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5115314.9421149IPR008808Powdery mildew resistance protein, RPW8 domain
PfamPF056591.3E-294138IPR008808Powdery mildew resistance protein, RPW8 domain
SuperFamilySSF576672.77E-5210236No hitNo description
PfamPF139122.0E-10212235IPR007087Zinc finger, C2H2
PROSITE profilePS501579.806213235IPR007087Zinc finger, C2H2
PROSITE patternPS000280215235IPR007087Zinc finger, C2H2
PfamPF139120.0016270286IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MAFIADAAMG SAISELLKVV IHVVKQTLHF KTDLKNLRKT LESVKLVSDE LEKLHKVLDR  60
PKEETERFIE QLTRGLELVH KCGAINKWNF PKQYTHSRKL VDLDKSIVKF FNIDVQGLVA  120
VNTFKTLIGV TQNNDKLDRL LGYIENDTDS VFGADFELNS ILDANGDELS GLGTVTVTDL  180
AGGIVELKDD TWIATTLTEM PCHHPHIYQT RVFECKTCNK QFSTFQALGG HRTAHIKLIR  240
HVRLNNLKDH VESSSANPRV HDQGPFSGPE FATGEALGGH MRRHRGGGGD NPTVNEKMNH  300
HIPVVKKSRS RRIICLDVNV TPFEHDSIDW GSSNSSG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017221026.10.0PREDICTED: zinc finger protein ZAT4-like
TrEMBLA0A175YP660.0A0A175YP66_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.18e-17C2H2 family protein