PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_027597

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

C2H2

Protein Properties

Length: 179aa MW: 19797.4 Da PI: 8.2033

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_027597	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.9	3.6e-05	35	57	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H+++H DCAR_027597 35 YSCSFCNRIFKSAQALGGHMNVH 57 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.08E-6	32	62	No hit	No description
PROSITE profile	PS50157	11.302	35	62	IPR007087	Zinc finger, C2H2
Pfam	PF13912	2.3E-5	35	58	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0032	35	57	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	37	57	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MEHYSQYLRS WEEQAFAEDV GEGLLGGFIW PPRCYSCSFC NRIFKSAQAL GGHMNVHRRD 60 RARLNQPLCL KTGGADKFFN SKSPNSLYSE TEAVKIIQGT KKLACRNPIL RKESAVETGL 120 SVGLNFCVEG NRGAERTGVG GDIKRRRTDC LLYIDCSSSD KDGIDLELRL GDSPTVLN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1njq_A	2e-11	30	57	2	29	superman protein
2l1o_A	2e-11	30	57	2	29	Transcriptional regulator SUPERMAN

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may regulate cell division and growth. {ECO:0000269\|PubMed:12154136}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017221620.1	1e-131	PREDICTED: probable transcriptional regulator RABBIT EARS
Swissprot	O80942	4e-22	ZFP10_ARATH; Zinc finger protein 10
TrEMBL	A0A175YPB5	1e-130	A0A175YPB5_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9045	20	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37740.1	2e-24	zinc-finger protein 10

Link Out ? help Back to Top
Phytozome	DCAR_027597